GEO Browser - GEO

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301 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			human gammaherpesvirus 4
GSE115829	PARP1 Stabilizes CTCF Binding and Chromatin Structure to Maintain Epstein Barr Virus Latency Type	Genome binding/occupancy profiling by high throughput sequencing	human gammaherpesvirus 4	8	BED BEDGRAPH BW NARROWPEAK SRA Run Selector	Italo Tempera	Jun 27, 2018
GSE198412	Nuclear lamina binds the EBV genome during latency and regulates viral gene expression [Hi-C]	Other	Homo sapiens human gammaherpesvirus 4	4	BED MATRIX	Priyankara J Wickramasinghe	Apr 08, 2022
GSE159834	The three-dimensional structure of Epstein-Barr virus genome varies by latency type and is regulated by PARP1 enzymatic activity [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	human gammaherpesvirus 4	8	BEDGRAPH BROADPEAK BW SRA Run Selector	Jozef Madzo	Nov 16, 2021
GSE159837	The three-dimensional structure of Epstein-Barr virus genome varies by latency type and is regulated by PARP1 enzymatic activity	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens human gammaherpesvirus 4	16	BEDGRAPH BROADPEAK BW	Jozef Madzo	Nov 16, 2021
GSE198954	The Nuclear Lamina Binds the EBV Genome During Latency and Regulates Viral Gene Expression	Genome binding/occupancy profiling by high throughput sequencing	human gammaherpesvirus 4	5	BEDGRAPH	Jozef Madzo	Mar 18, 2022
GSE245534	A distinct isoform of lymphoid enhancer binding factor 1 (LEF1) epigenetically restricts EBV reactivation to maintain viral latency	Genome binding/occupancy profiling by high throughput sequencing	human gammaherpesvirus 4	31	BEDGRAPH	Rona S. Scott	Dec 05, 2023
GSE239992	The three-dimensional structure of the EBV genome plays a crucial role in regulating viral gene expression in EBVaGC [HiChIP]	Other	Homo sapiens human gammaherpesvirus 4	4	BEDPE TXT	Italo Tempera	Oct 11, 2023
GSE239995	The three-dimensional structure of the EBV genome plays a crucial role in regulating viral gene expression in EBVaGC	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens human gammaherpesvirus 4	29	BEDPE BW NARROWPEAK TXT	Italo Tempera	Oct 11, 2023
GSE42478	Defining a molecular roadmap of cellular reprogramming into iPS cells	Expression profiling by array Non-coding RNA profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array	Betapolyomavirus hominis Betapolyomavirus macacae Homo sapiens Human alphaherpesvirus 1 Human alphaherpesvirus 2 Human betaherpesvirus 5 Human gammaherpesvirus 8 Human immunodeficiency virus 1 JC polyomavirus Merkel cell polyomavirus Murid betaherpesvirus 1 Murid gammaherpesvirus 4 Mus musculus Rattus norvegicus human gammaherpesvirus 4	61	BIGWIG CEL PAIR TXT	Ben S. Wittner	Dec 20, 2012
GSE221624	Unstable EBV latency drives inflammation in multiple sclerosis patient derived spontaneous B cells [EBV WGS]	Other	human gammaherpesvirus 4	9	BW TXT	Priyankara J Wickramasinghe	Dec 21, 2023
GSE221625	Unstable EBV latency drives inflammation in multiple sclerosis patient derived spontaneous B cells	Expression profiling by high throughput sequencing Other	Homo sapiens human gammaherpesvirus 4	18	BW	Priyankara J Wickramasinghe	Dec 21, 2023
GSE234603	Decitabine disrupts EBV genomic epiallele DNA methylation patterns around CTCF binding sites to increase chromatin accessibility and lytic transcription in gastric cancer [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	human gammaherpesvirus 4	8	BW	Sarah Alp	Aug 04, 2023
GSE234658	Decitabine disrupts EBV genomic epiallele DNA methylation patterns around CTCF binding sites to increase chromatin accessibility and lytic transcription in gastric cancer	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	human gammaherpesvirus 4	16	BW COV	Sarah Alp	Jun 14, 2023
GSE239645	Decitabine disrupts EBV genomic epiallele DNA methylation patterns around CTCF binding sites to increase chromatin accessibility and lytic transcription in gastric cancer [ATAC]	Genome binding/occupancy profiling by high throughput sequencing	human gammaherpesvirus 4	12	BW	Priyankara J Wickramasinghe	Aug 02, 2023
GSE239767	Decitabine disrupts EBV genomic epiallele DNA methylation patterns around CTCF binding sites to increase chromatin accessibility and lytic transcription in gastric cancer [RNA]	Expression profiling by high throughput sequencing	human gammaherpesvirus 4	18	BW TXT	Priyankara J Wickramasinghe	Aug 02, 2023
GSE239770	Decitabine disrupts EBV genomic epiallele DNA methylation patterns around CTCF binding sites to increase chromatin accessibility and lytic transcription in gastric cancer	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	human gammaherpesvirus 4	30	BW	Priyankara J Wickramasinghe	Aug 02, 2023
GSE239987	The three-dimensional structure of the EBV genome plays a crucial role in regulating viral gene expression in EBVaGC [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	human gammaherpesvirus 4	12	BW NARROWPEAK	Italo Tempera	Oct 11, 2023
GSE19248	Performance Evaluation of Commercial miRNA Expression Array Platforms	Non-coding RNA profiling by array	Betapolyomavirus hominis Betapolyomavirus macacae Homo sapiens Human alphaherpesvirus 1 Human betaherpesvirus 5 Human gammaherpesvirus 8 Human immunodeficiency virus 1 JC polyomavirus Mus musculus Rattus norvegicus human gammaherpesvirus 4 synthetic construct	28	CEL TXT XML	Sachin Sah	Mar 18, 2010
GSE19693	STAR RNA-binding protein, Quaking, suppresses cancer via regulation of microRNA	Expression profiling by array Non-coding RNA profiling by array	Betapolyomavirus hominis Betapolyomavirus macacae Homo sapiens Human alphaherpesvirus 1 Human betaherpesvirus 5 Human gammaherpesvirus 8 Human immunodeficiency virus 1 JC polyomavirus Murid betaherpesvirus 1 Murid gammaherpesvirus 4 Mus musculus Rattus norvegicus human gammaherpesvirus 4	48	CEL TXT	Hailei Zhang	Dec 30, 2009
GSE25320	Characterisation of mRNA and microRNA in human mast cell exosomes and their transfer to other mast cells and blood CD34 progenitor cells	Expression profiling by array Non-coding RNA profiling by array	Betapolyomavirus hominis Betapolyomavirus macacae Homo sapiens Human alphaherpesvirus 1 Human betaherpesvirus 5 Human gammaherpesvirus 8 Human immunodeficiency virus 1 JC polyomavirus Mus musculus Rattus norvegicus human gammaherpesvirus 4	11	CEL CHP TXT	Karin Ekström	Apr 16, 2012