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301 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			human gammaherpesvirus 4
GSE65276	Autoimmune peptide antigen reactivity in BXD2 mice with spontaneous systemic autoimmune disease	Protein profiling by protein array	Caprine arthritis encephalitis virus Homo sapiens Human alphaherpesvirus 2 Human endogenous retrovirus K Klebsiella pneumoniae Mus musculus Mycobacterium tuberculosis Proteus mirabilis Torque teno virus human gammaherpesvirus 4	1	XLSX	Jennie Hamilton	Feb 28, 2015
GSE65277	Autoimmune peptide antigen reactivity in normal B6 mice Pepperchip 2.0	Protein profiling by protein array	Betapolyomavirus macacae Chlamydia pneumoniae Chlamydia trachomatis Coxsackievirus A20 Coxsackievirus A9 Coxsackievirus B4 Coxsackievirus B4 (strain E2) Escherichia coli Haemophilus influenzae Helicobacter pylori Hepacivirus hominis Hepatitis C virus isolate HC-J6 Homo sapiens Human Endogenous Retrovirus IDDMK1,2-22 Human T-cell leukemia virus type I Human T-cell lymphotrophic virus type 1 (isolate MT-2) Human adenovirus 12 Human alphaherpesvirus 1 Human alphaherpesvirus 2 Human betaherpesvirus 5 Human betaherpesvirus 6 Human endogenous retrovirus K Human herpesvirus 4 strain B95-8 Human herpesvirus 4 type 1 Human herpesvirus 4 type 2 Human immunodeficiency virus 1 Human poliovirus 3 strain Sabin Human rotavirus MP409 Klebsiella pneumoniae Lactobacillus delbrueckii subsp. bulgaricus Mus musculus Mycobacterium avium Mycobacterium avium subsp. paratuberculosis Mycobacterium avium subsp. paratuberculosis K-10 Mycobacterium gordonae Mycobacterium tuberculosis Mycobacterium tuberculosis variant bovis Paraburkholderia fungorum Porphyromonas gingivalis Porphyromonas gingivalis W83 Prochlorococcus marinus str. MIT 9202 Proteus mirabilis Shigella flexneri Staphylococcus aureus Staphylococcus aureus A9635 Streptococcus pyogenes Torque teno virus Trypanosoma cruzi Yersinia enterocolitica human gammaherpesvirus 4	2	XLSX	Jennie Hamilton	Feb 28, 2015
GSE65278	Autoimmune peptide antigen reactivity in BXD2 mice with spontaneous systemic autoimmune disease Pepperchip 2.0	Protein profiling by protein array	Betapolyomavirus macacae Chlamydia pneumoniae Chlamydia trachomatis Coxsackievirus A20 Coxsackievirus A9 Coxsackievirus B4 Coxsackievirus B4 (strain E2) Escherichia coli Haemophilus influenzae Helicobacter pylori Hepacivirus hominis Hepatitis C virus isolate HC-J6 Homo sapiens Human Endogenous Retrovirus IDDMK1,2-22 Human T-cell leukemia virus type I Human T-cell lymphotrophic virus type 1 (isolate MT-2) Human adenovirus 12 Human alphaherpesvirus 1 Human alphaherpesvirus 2 Human betaherpesvirus 5 Human betaherpesvirus 6 Human endogenous retrovirus K Human herpesvirus 4 strain B95-8 Human herpesvirus 4 type 1 Human herpesvirus 4 type 2 Human immunodeficiency virus 1 Human poliovirus 3 strain Sabin Human rotavirus MP409 Klebsiella pneumoniae Lactobacillus delbrueckii subsp. bulgaricus Mus musculus Mycobacterium avium Mycobacterium avium subsp. paratuberculosis Mycobacterium avium subsp. paratuberculosis K-10 Mycobacterium gordonae Mycobacterium tuberculosis Mycobacterium tuberculosis variant bovis Paraburkholderia fungorum Porphyromonas gingivalis Porphyromonas gingivalis W83 Prochlorococcus marinus str. MIT 9202 Proteus mirabilis Shigella flexneri Staphylococcus aureus Staphylococcus aureus A9635 Streptococcus pyogenes Torque teno virus Trypanosoma cruzi Yersinia enterocolitica human gammaherpesvirus 4	2	XLSX	Jennie Hamilton	Feb 28, 2015
GSE65290	General Approach for Tetramer Based Identification of Autoantigen Reactive B Cells: Characterization of La and snRNP Reactive B Cells in Autoimmune BXD2 Mice	Protein profiling by protein array	Betapolyomavirus macacae Caprine arthritis encephalitis virus Chlamydia pneumoniae Chlamydia trachomatis Coxsackievirus A20 Coxsackievirus A9 Coxsackievirus B4 Coxsackievirus B4 (strain E2) Escherichia coli Haemophilus influenzae Helicobacter pylori Hepacivirus hominis Hepatitis C virus isolate HC-J6 Homo sapiens Human Endogenous Retrovirus IDDMK1,2-22 Human T-cell leukemia virus type I Human T-cell lymphotrophic virus type 1 (isolate MT-2) Human adenovirus 12 Human alphaherpesvirus 1 Human alphaherpesvirus 2 Human betaherpesvirus 5 Human betaherpesvirus 6 Human endogenous retrovirus K Human herpesvirus 4 strain B95-8 Human herpesvirus 4 type 1 Human herpesvirus 4 type 2 Human immunodeficiency virus 1 Human poliovirus 3 strain Sabin Human rotavirus MP409 Klebsiella pneumoniae Lactobacillus delbrueckii subsp. bulgaricus Mus musculus Mycobacterium avium Mycobacterium avium subsp. paratuberculosis Mycobacterium avium subsp. paratuberculosis K-10 Mycobacterium gordonae Mycobacterium tuberculosis Mycobacterium tuberculosis variant bovis Paraburkholderia fungorum Porphyromonas gingivalis Porphyromonas gingivalis W83 Prochlorococcus marinus str. MIT 9202 Proteus mirabilis Shigella flexneri Staphylococcus aureus Staphylococcus aureus A9635 Streptococcus pyogenes Torque teno virus Trypanosoma cruzi Yersinia enterocolitica human gammaherpesvirus 4	29	XLSX	Jennie Hamilton	Feb 28, 2015
GSE117140	Comparative analyses of human saliva and plasma IgG antibody reactivities [EBV]	Protein profiling by protein array	Homo sapiens human gammaherpesvirus 4	65	GPR	Peter Hettegger	Jul 17, 2018
GSE117142	Comparative analyses of human saliva and plasma IgG antibody reactivities	Protein profiling by protein array	Hepatitis B virus adw/991 Homo sapiens human gammaherpesvirus 4	105	GPR	Peter Hettegger	Jul 17, 2018
GSE75776	Epstein-Barr Viral miRNAs Broadly Inhibit Adaptive Immunity Early in Infection	Other Expression profiling by high throughput sequencing	Homo sapiens human gammaherpesvirus 4	24	TXT SRA Run Selector	Dominik Lutter	Aug 09, 2016
GSE84210	BET inhibitors suppress BZLF1 expression [MutuI DNA-seq]	Other	Homo sapiens human gammaherpesvirus 4	12	XLSX SRA Run Selector	JJ Miranda	Jun 30, 2017
GSE84212	BET inhibitors suppress lytic DNA replication [Akata-Zta DNA-seq]	Other	Homo sapiens human gammaherpesvirus 4	30	XLSX SRA Run Selector	JJ Miranda	Jun 30, 2017
GSE84214	BET inhibitors block the Epstein-Barr virus lytic cycle at two distinct steps	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens human gammaherpesvirus 4	106	WIG	JJ Miranda	Jun 30, 2017
GSE98120	The Epstein-Barr virus episome maneuvers between nuclear chromatin compartments during reactivation [HiC-seq]	Other	Homo sapiens Human gammaherpesvirus 8 Human papillomavirus 16 human gammaherpesvirus 4 human papillomavirus 31	32	TXT SRA Run Selector	JJ Miranda	Nov 13, 2017
GSE98123	The Epstein-Barr virus episome maneuvers between nuclear chromatin compartments during reactivation	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Human gammaherpesvirus 8 Human papillomavirus 16 human gammaherpesvirus 4 human papillomavirus 31	46	TXT WIG	JJ Miranda	Nov 13, 2017
GSE98498	The Epstein-Barr virus episome maneuvers between nuclear chromatin compartments during reactivation [DNA-seq]	Other	Homo sapiens human gammaherpesvirus 4	10	WIG SRA Run Selector	JJ Miranda	Nov 13, 2017
GSE98772	JQ1 prevents BRD4 recruitment to the lytic origins of replication [Akata-Zta DNA-seq]	Other	Homo sapiens human gammaherpesvirus 4	8	WIG SRA Run Selector	JJ Miranda	Jun 30, 2017
GSE100869	The Epstein-Barr virus B-ZIP protein Zta recognizes specific DNA sequences containing 5-methylcytosine and 5-hydroxymethylcytosine [Zta_5mCG]	Other	Mus musculus human gammaherpesvirus 4 synthetic construct	16	TXT	Desiree Tillo	Oct 26, 2017
GSE100870	The Epstein-Barr virus B-ZIP protein Zta recognizes specific DNA sequences containing 5-methylcytosine and 5-hydroxymethylcytosine [Zta_5mC_5hmC]	Other	Mus musculus human gammaherpesvirus 4 synthetic construct	31	TXT	Desiree Tillo	Oct 26, 2017
GSE100871	The Epstein-Barr virus B-ZIP protein Zta recognizes specific DNA sequences containing 5-methylcytosine and 5-hydroxymethylcytosine	Other	Mus musculus human gammaherpesvirus 4 synthetic construct	47	TXT	Desiree Tillo	Oct 26, 2017
GSE108272	Replacing C189 in the bZIP domain of Zta to S, T, V, and A changes DNA binding specificity to four types of double-stranded DNA (mC)	Other	human gammaherpesvirus 4 synthetic construct	29	TXT	Desiree Tillo	May 14, 2018
GSE108273	Replacing C189 in the bZIP domain of Zta to S, T, V, and A changes DNA binding specificity to four types of double-stranded DNA (mCG)	Other	human gammaherpesvirus 4 synthetic construct	20	TXT	Desiree Tillo	May 14, 2018
GSE115351	Mutating Zta (182N) changes sequence specific DNA binding (5mC + 5hmC)	Other	human gammaherpesvirus 4 synthetic construct	34	TXT	Desiree Tillo	Jun 04, 2019