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14 series

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Accession	Title	Series type(s)	Organism(s)	Samples	GDS	Supplementary	Contact	Release date
Filter			Mycobacterium avium subsp. paratuberculosis
GSE267014	Spermine-induced DNA methylation change in human macrophages	Methylation profiling by array	Bartonella henselae Bartonella quintana Campylobacter jejuni Cowpox virus Escherichia coli O157:H7 Francisella tularensis subsp. holarctica Francisella tularensis subsp. mediasiatica Francisella tularensis subsp. novicida Francisella tularensis subsp. tularensis Homo sapiens Leptospira interrogans Mammarenavirus choriomeningitidis Mycobacterium avium Mycobacterium avium subsp. paratuberculosis Mycobacterium canetti Mycobacterium tuberculosis Mycobacterium tuberculosis variant bovis Mycobacterium tuberculosis variant microti Orthohantavirus puumalaense Orthohantavirus seoulense Paslahepevirus balayani Rickettsia prowazekii Rickettsia typhi Salmonella enterica subsp. enterica serovar Typhimurium Staphylococcus aureus Streptobacillus moniliformis Toxoplasma gondii Yersinia enterocolitica Yersinia pestis Yersinia pseudotuberculosis	4		IDAT TXT	Hongde Li	May 13, 2024
GSE244734	The Fur-like regulatory protein MAP3773c modulates key metabolic pathways in Mycobacterium avium subsp. paratuberculosis under in-vitro iron starvation	Expression profiling by high throughput sequencing	Mycobacterium avium subsp. paratuberculosis	20		TXT	Srinand Sreevatsan	Apr 18, 2024
GSE77765	Detection of a Yersinia pestis homologue in rodent samples	Genome variation profiling by array	Apodemus sylvaticus Bartonella henselae Bartonella quintana Campylobacter jejuni Cowpox virus Escherichia coli O157:H7 Francisella tularensis subsp. holarctica Francisella tularensis subsp. mediasiatica Francisella tularensis subsp. novicida Francisella tularensis subsp. tularensis Leptospira interrogans Mammarenavirus choriomeningitidis Mus musculus Mycobacterium avium Mycobacterium avium subsp. paratuberculosis Mycobacterium canetti Mycobacterium tuberculosis Mycobacterium tuberculosis variant bovis Mycobacterium tuberculosis variant microti Orthohantavirus puumalaense Orthohantavirus seoulense Paslahepevirus balayani Rattus norvegicus Rattus rattus Rickettsia prowazekii Rickettsia typhi Salmonella enterica subsp. enterica serovar Typhimurium Staphylococcus aureus Streptobacillus moniliformis Toxoplasma gondii Yersinia enterocolitica Yersinia pestis Yersinia pseudotuberculosis	65		TXT	Tim Giles	Feb 11, 2016
GSE65277	Autoimmune peptide antigen reactivity in normal B6 mice Pepperchip 2.0	Protein profiling by protein array	Betapolyomavirus macacae Chlamydia pneumoniae Chlamydia trachomatis Coxsackievirus A20 Coxsackievirus A9 Coxsackievirus B4 Coxsackievirus B4 (strain E2) Escherichia coli Haemophilus influenzae Helicobacter pylori Hepacivirus hominis Hepatitis C virus isolate HC-J6 Homo sapiens Human Endogenous Retrovirus IDDMK1,2-22 Human T-cell leukemia virus type I Human T-cell lymphotrophic virus type 1 (isolate MT-2) Human adenovirus 12 Human alphaherpesvirus 1 Human alphaherpesvirus 2 Human betaherpesvirus 5 Human betaherpesvirus 6 Human endogenous retrovirus K Human herpesvirus 4 strain B95-8 Human herpesvirus 4 type 1 Human herpesvirus 4 type 2 Human immunodeficiency virus 1 Human poliovirus 3 strain Sabin Human rotavirus MP409 Klebsiella pneumoniae Lactobacillus delbrueckii subsp. bulgaricus Mus musculus Mycobacterium avium Mycobacterium avium subsp. paratuberculosis Mycobacterium avium subsp. paratuberculosis K-10 Mycobacterium gordonae Mycobacterium tuberculosis Mycobacterium tuberculosis variant bovis Paraburkholderia fungorum Porphyromonas gingivalis Porphyromonas gingivalis W83 Prochlorococcus marinus str. MIT 9202 Proteus mirabilis Shigella flexneri Staphylococcus aureus Staphylococcus aureus A9635 Streptococcus pyogenes Torque teno virus Trypanosoma cruzi Yersinia enterocolitica human gammaherpesvirus 4	2		XLSX	Jennie Hamilton	Feb 28, 2015
GSE65278	Autoimmune peptide antigen reactivity in BXD2 mice with spontaneous systemic autoimmune disease Pepperchip 2.0	Protein profiling by protein array	Betapolyomavirus macacae Chlamydia pneumoniae Chlamydia trachomatis Coxsackievirus A20 Coxsackievirus A9 Coxsackievirus B4 Coxsackievirus B4 (strain E2) Escherichia coli Haemophilus influenzae Helicobacter pylori Hepacivirus hominis Hepatitis C virus isolate HC-J6 Homo sapiens Human Endogenous Retrovirus IDDMK1,2-22 Human T-cell leukemia virus type I Human T-cell lymphotrophic virus type 1 (isolate MT-2) Human adenovirus 12 Human alphaherpesvirus 1 Human alphaherpesvirus 2 Human betaherpesvirus 5 Human betaherpesvirus 6 Human endogenous retrovirus K Human herpesvirus 4 strain B95-8 Human herpesvirus 4 type 1 Human herpesvirus 4 type 2 Human immunodeficiency virus 1 Human poliovirus 3 strain Sabin Human rotavirus MP409 Klebsiella pneumoniae Lactobacillus delbrueckii subsp. bulgaricus Mus musculus Mycobacterium avium Mycobacterium avium subsp. paratuberculosis Mycobacterium avium subsp. paratuberculosis K-10 Mycobacterium gordonae Mycobacterium tuberculosis Mycobacterium tuberculosis variant bovis Paraburkholderia fungorum Porphyromonas gingivalis Porphyromonas gingivalis W83 Prochlorococcus marinus str. MIT 9202 Proteus mirabilis Shigella flexneri Staphylococcus aureus Staphylococcus aureus A9635 Streptococcus pyogenes Torque teno virus Trypanosoma cruzi Yersinia enterocolitica human gammaherpesvirus 4	2		XLSX	Jennie Hamilton	Feb 28, 2015
GSE65290	General Approach for Tetramer Based Identification of Autoantigen Reactive B Cells: Characterization of La and snRNP Reactive B Cells in Autoimmune BXD2 Mice	Protein profiling by protein array	Betapolyomavirus macacae Caprine arthritis encephalitis virus Chlamydia pneumoniae Chlamydia trachomatis Coxsackievirus A20 Coxsackievirus A9 Coxsackievirus B4 Coxsackievirus B4 (strain E2) Escherichia coli Haemophilus influenzae Helicobacter pylori Hepacivirus hominis Hepatitis C virus isolate HC-J6 Homo sapiens Human Endogenous Retrovirus IDDMK1,2-22 Human T-cell leukemia virus type I Human T-cell lymphotrophic virus type 1 (isolate MT-2) Human adenovirus 12 Human alphaherpesvirus 1 Human alphaherpesvirus 2 Human betaherpesvirus 5 Human betaherpesvirus 6 Human endogenous retrovirus K Human herpesvirus 4 strain B95-8 Human herpesvirus 4 type 1 Human herpesvirus 4 type 2 Human immunodeficiency virus 1 Human poliovirus 3 strain Sabin Human rotavirus MP409 Klebsiella pneumoniae Lactobacillus delbrueckii subsp. bulgaricus Mus musculus Mycobacterium avium Mycobacterium avium subsp. paratuberculosis Mycobacterium avium subsp. paratuberculosis K-10 Mycobacterium gordonae Mycobacterium tuberculosis Mycobacterium tuberculosis variant bovis Paraburkholderia fungorum Porphyromonas gingivalis Porphyromonas gingivalis W83 Prochlorococcus marinus str. MIT 9202 Proteus mirabilis Shigella flexneri Staphylococcus aureus Staphylococcus aureus A9635 Streptococcus pyogenes Torque teno virus Trypanosoma cruzi Yersinia enterocolitica human gammaherpesvirus 4	29		XLSX	Jennie Hamilton	Feb 28, 2015
GSE62566	Characterization of the inflammatory phenotype of Mycobacterium avium subspecies paratuberculosis	Expression profiling by array	Mycobacterium avium subsp. avium Mycobacterium avium subsp. paratuberculosis	18		GPR	Luiz E Bermudez	Nov 01, 2014
GSE36053	Transcriptomic response of the auxotrophic Mycobacterium avium subspecies paratuberculosis (MAP) leuD mutant under environmental stresses	Expression profiling by array	Mycobacterium avium subsp. paratuberculosis Mycobacterium avium subsp. paratuberculosis K-10	24		TXT	Jenn-Wei Chen	Feb 16, 2013
GSE32235	Differentially regulated genes induced by in vitro generated Mycobacterium avium subspecies paratuberculosis cell wall deficient forms	Expression profiling by array	Mycobacterium avium subsp. paratuberculosis Mycobacterium avium subsp. paratuberculosis K-10	1		GPR	Andrea Cossu	Nov 29, 2012
GSE32237	Transcriptional profile of pathogenic and non-pathogenic in vitro generated mycobacterial cell wall deficient forms	Expression profiling by array	Mycobacterium avium subsp. paratuberculosis Mycobacterium avium subsp. paratuberculosis K-10 Mycobacterium tuberculosis H37Rv Mycolicibacterium smegmatis MC2 155	3		GPR	Andrea Cossu	Nov 29, 2012
GSE32241	Differentially regulated genes induced in Mycobacterium avium subspecies paratuberculosis by in vitro acid-nitrosative multi-stress	Expression profiling by array	Mycobacterium avium subsp. paratuberculosis Mycobacterium avium subsp. paratuberculosis K-10	1		GPR	Andrea Cossu	Jun 01, 2012
GSE32242	Differentially regulated genes induced in Mycobacterium avium subspecies paratuberculosis by in vitro infection of THP-1 human macrophage cell line	Expression profiling by array	Mycobacterium avium subsp. paratuberculosis Mycobacterium avium subsp. paratuberculosis K-10	1		GPR	Andrea Cossu	Jun 01, 2012
GSE32243	Mycobacterium avium subsp. paratuberculosis gene transcription in simulated phagosomal environment and in human macrophage infection	Expression profiling by array	Mycobacterium avium subsp. paratuberculosis Mycobacterium avium subsp. paratuberculosis K-10	2		GPR	Andrea Cossu	Jun 01, 2012
GSE7622	Comparative genomic hybridizations of Mycobacterium avium isolates obtained from multiple host species	Genome variation profiling by array	Mycobacterium avium Mycobacterium avium subsp. avium Mycobacterium avium subsp. paratuberculosis	143		CSV	Mike Paustian	Apr 27, 2007