GEO Browser - GEO

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1802 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			synthetic construct
GSE157085	Diverse CGG binding proteins across eukaryotes produced by independent domestications of hAT transposons	Other	Acanthochromis polyacanthus Acipenser ruthenus Acyrthosiphon pisum Aedes aegypti Amphiprion ocellaris Amphiprion percula Anabarilius grahami Anabas testudineus Austrofundulus limnaeus Chrysemys picta Crocodylus porosus Culex quinquefasciatus Cyprinus carpio Erpetoichthys calabaricus Fundulus heteroclitus Gallus gallus Hippocampus comes Hofstenia miamia Homo sapiens Hucho hucho Kryptolebias marmoratus Labeo rohita Latimeria chalumnae Locusta migratoria Mola mola Nematostella vectensis Paramormyrops kingsleyae Petromyzon marinus Rhipicephalus appendiculatus Rhizophagus irregularis Rhodnius prolixus Salarias fasciatus Salmo salar Sparus aurata Sphaeramia orbicularis synthetic construct	258	TXT	Isaac Yellan	Feb 09, 2021
GSE84589	Cis-regulatory landscape of four cell types of the retina	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Adeno-associated virus Mus musculus synthetic construct	64	TAB SRA Run Selector	Dirk Schuebeler	Oct 25, 2017
GSE149518	miRNA profiles on wild caught mosquitoes in Grenada West Indies	Non-coding RNA profiling by array	Aedes aegypti Culex quinquefasciatus synthetic construct	2	CEL	Maria Eugenia Ramos-Nino	Apr 29, 2020
GSE13977	Expression of lignin-degrading enzymes in soils using targeted microarrays	Expression profiling by array	Agaricus bisporus Botrytis cinerea Coriolopsis gallica Cryphonectria parasitica Dichomitus squalens Fusarium oxysporum Fusarium proliferatum Gelatoporia subvermispora Heterobasidion annosum Lentinula edodes Neurospora crassa Phanerodontia chrysosporium Phlebia radiata Pleurotus eryngii Pleurotus ostreatus Schizophyllum commune Trametes cinnabarina Trametes coccinea Trametes versicolor synthetic construct unidentified	68	TXT	Katrina M Waters	Jun 01, 2009
GSE65430	Organic matter loading modifies the microbial community responsible for nitrogen loss in estuarine sediments	Other	aquatic metagenome synthetic construct	4	TXT	Bess B Ward	Jan 30, 2015
GSE31492	miRNA expression data from low nitrate cultures in maize	Non-coding RNA profiling by array	Arabidopsis thaliana Glycine max Medicago truncatula Oryza sativa Physcomitrium patens Populus trichocarpa Saccharum officinarum Sorghum bicolor Zea mays Zea mays subsp. mays synthetic construct	21	CEL	Chuanxiao Xie	Sep 01, 2011
GSE73117	Evaluation of DNA-binding preferences of non-metazoan C2H2 zinc finger proteins by PBM	Other	Arabidopsis thaliana Batrachochytrium dendrobatidis Dictyostelium discoideum Histoplasma capsulatum Neurospora crassa Physcomitrium patens Puccinia graminis Rhizopus delemar Schizophyllum commune Schizosaccharomyces pombe Toxoplasma gondii synthetic construct	86	TXT	Hamed S Najafabadi	Jul 10, 2017
GSE116998	Effect of submergence on wild-type (Col-0) Arabidopsis plants	Non-coding RNA profiling by array	Arabidopsis thaliana synthetic construct	5	CEL	Pierdomenico Perata	Dec 01, 2019
GSE130837	QBiC-Pred: Quantitative Predictions of Transcription Factor Binding Changes Due to Sequence Variants	Other	Arabidopsis thaliana Homo sapiens Mus musculus synthetic construct	12	TXT	Raluca Gordan	May 08, 2019
GSE183453	R-loop landscapes during parental-to-zygotic transition in zebrafish	Other Expression profiling by high throughput sequencing	Arabidopsis thaliana Danio rerio Escherichia coli synthetic construct	60	BW SRA Run Selector	li kuan	May 29, 2024
GSE223017	UV irradiation remodels the specificity landscape of transcription factors [85438_Proteins]	Other	Arabidopsis thaliana Homo sapiens synthetic construct	16	TXT	Raluca Gordan	Jan 20, 2023
GSE223023	UV irradiation remodels the specificity landscape of transcription factors	Other	Arabidopsis thaliana Homo sapiens Mus musculus synthetic construct	46	TXT	Raluca Gordan	Jan 20, 2023
GSE246151	Enhanced detection of RNA modifications with high-accuracy nanopore RNA basecalling models	Other	Arabidopsis thaliana Homo sapiens Mus musculus Saccharomyces cerevisiae Xenopus laevis synthetic construct	70	CSV FA FASTA TSV TXT	Gregor Diensthuber	Aug 26, 2024
GSE72072	The inhibition of N2O production by ocean acidification in cold temperate and polar waters	Other	Archaea seawater metagenome synthetic construct	85	TXT	Bess B Ward	Aug 15, 2015
GSE77866	Functional gene diversity of microbial communities sampled in 2010 in CiPHER site, Aklaska	Genome variation profiling by array	Archaea Bacteria Eukaryota Viruses synthetic construct	12	FTR	Jizhong Zhou	Feb 22, 2016
GSE97107	Functional gene abundance of tundra soil microbial communities sampled at the EML Thaw Gradient site, AK in May 2004	Genome variation profiling by array	Archaea Bacteria Eukaryota Viruses synthetic construct	107	FTR	Jizhong Zhou	Jun 03, 2019
GSE117831	Survey functional genes in Arctic marine sediment communities	Other	Archaea Bacteria Eukaryota Viruses marine sediment metagenome synthetic construct	2	TXT	Brandon T Hassett	Jul 14, 2020
GSE142804	Regulation of nitrous oxide production in low oxygen waters off the coast of Peru [BC015]	Other	Archaea seawater metagenome synthetic construct	42	TXT	Bess B Ward	Jan 07, 2020
GSE142805	Regulation of nitrous oxide production in low oxygen waters off the coast of Peru [BC016]	Other	Archaea seawater metagenome synthetic construct	32	TXT	Bess B Ward	Jan 07, 2020
GSE142806	Regulation of nitrous oxide production in low oxygen waters off the coast of Peru	Other	Archaea seawater metagenome synthetic construct	74	TXT	Bess B Ward	Jan 07, 2020