GEO Browser - GEO

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592 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			synthetic construct		TXT
GSE157085	Diverse CGG binding proteins across eukaryotes produced by independent domestications of hAT transposons	Other	Acanthochromis polyacanthus Acipenser ruthenus Acyrthosiphon pisum Aedes aegypti Amphiprion ocellaris Amphiprion percula Anabarilius grahami Anabas testudineus Austrofundulus limnaeus Chrysemys picta Crocodylus porosus Culex quinquefasciatus Cyprinus carpio Erpetoichthys calabaricus Fundulus heteroclitus Gallus gallus Hippocampus comes Hofstenia miamia Homo sapiens Hucho hucho Kryptolebias marmoratus Labeo rohita Latimeria chalumnae Locusta migratoria Mola mola Nematostella vectensis Paramormyrops kingsleyae Petromyzon marinus Rhipicephalus appendiculatus Rhizophagus irregularis Rhodnius prolixus Salarias fasciatus Salmo salar Sparus aurata Sphaeramia orbicularis synthetic construct	258	TXT	Isaac Yellan	Feb 09, 2021
GSE13977	Expression of lignin-degrading enzymes in soils using targeted microarrays	Expression profiling by array	Agaricus bisporus Botrytis cinerea Coriolopsis gallica Cryphonectria parasitica Dichomitus squalens Fusarium oxysporum Fusarium proliferatum Gelatoporia subvermispora Heterobasidion annosum Lentinula edodes Neurospora crassa Phanerodontia chrysosporium Phlebia radiata Pleurotus eryngii Pleurotus ostreatus Schizophyllum commune Trametes cinnabarina Trametes coccinea Trametes versicolor synthetic construct unidentified	68	TXT	Katrina M Waters	Jun 01, 2009
GSE65430	Organic matter loading modifies the microbial community responsible for nitrogen loss in estuarine sediments	Other	aquatic metagenome synthetic construct	4	TXT	Bess B Ward	Jan 30, 2015
GSE73117	Evaluation of DNA-binding preferences of non-metazoan C2H2 zinc finger proteins by PBM	Other	Arabidopsis thaliana Batrachochytrium dendrobatidis Dictyostelium discoideum Histoplasma capsulatum Neurospora crassa Physcomitrium patens Puccinia graminis Rhizopus delemar Schizophyllum commune Schizosaccharomyces pombe Toxoplasma gondii synthetic construct	86	TXT	Hamed S Najafabadi	Jul 10, 2017
GSE130837	QBiC-Pred: Quantitative Predictions of Transcription Factor Binding Changes Due to Sequence Variants	Other	Arabidopsis thaliana Homo sapiens Mus musculus synthetic construct	12	TXT	Raluca Gordan	May 08, 2019
GSE223017	UV irradiation remodels the specificity landscape of transcription factors [85438_Proteins]	Other	Arabidopsis thaliana Homo sapiens synthetic construct	16	TXT	Raluca Gordan	Jan 20, 2023
GSE223023	UV irradiation remodels the specificity landscape of transcription factors	Other	Arabidopsis thaliana Homo sapiens Mus musculus synthetic construct	46	TXT	Raluca Gordan	Jan 20, 2023
GSE246151	Enhanced detection of RNA modifications with high-accuracy nanopore RNA basecalling models	Other	Arabidopsis thaliana Homo sapiens Mus musculus Saccharomyces cerevisiae Xenopus laevis synthetic construct	70	CSV FA FASTA TSV TXT	Gregor Diensthuber	Aug 26, 2024
GSE72072	The inhibition of N2O production by ocean acidification in cold temperate and polar waters	Other	Archaea seawater metagenome synthetic construct	85	TXT	Bess B Ward	Aug 15, 2015
GSE117831	Survey functional genes in Arctic marine sediment communities	Other	Archaea Bacteria Eukaryota Viruses marine sediment metagenome synthetic construct	2	TXT	Brandon T Hassett	Jul 14, 2020
GSE142804	Regulation of nitrous oxide production in low oxygen waters off the coast of Peru [BC015]	Other	Archaea seawater metagenome synthetic construct	42	TXT	Bess B Ward	Jan 07, 2020
GSE142805	Regulation of nitrous oxide production in low oxygen waters off the coast of Peru [BC016]	Other	Archaea seawater metagenome synthetic construct	32	TXT	Bess B Ward	Jan 07, 2020
GSE142806	Regulation of nitrous oxide production in low oxygen waters off the coast of Peru	Other	Archaea seawater metagenome synthetic construct	74	TXT	Bess B Ward	Jan 07, 2020
GSE148431	Endophytic and rhizophytic prokaryotic communities in S. alterniflora and petroleum degradation	Expression profiling by array	Archaea Bacteria Eukaryota Viruses synthetic construct uncultured bacterium	24	TXT	Claudia Gunsch	Apr 10, 2020
GSE111116	The gut microbiome can transmit environmental responses to the next generation [16s-amplicon]	Other	Bacteria synthetic construct	33	TXT SRA Run Selector	Aman Zare	Oct 10, 2018
GSE186880	Reuterin in the healthy gut microbiome suppresses colorectal cancer growth through altering redox balance	Other	Bacteria feces metagenome mouse gut metagenome synthetic construct	71	TXT SRA Run Selector	Yatrik Shah	Dec 12, 2021
GSE19248	Performance Evaluation of Commercial miRNA Expression Array Platforms	Non-coding RNA profiling by array	Betapolyomavirus hominis Betapolyomavirus macacae Homo sapiens Human alphaherpesvirus 1 Human betaherpesvirus 5 Human gammaherpesvirus 8 Human immunodeficiency virus 1 JC polyomavirus Mus musculus Rattus norvegicus human gammaherpesvirus 4 synthetic construct	28	CEL TXT XML	Sachin Sah	Mar 18, 2010
GSE44265	HIV-1 Tat protein promotes neuronal dysfunction through disruption of microRNAs.	Expression profiling by array Non-coding RNA profiling by array	Betapolyomavirus hominis Betapolyomavirus macacae Homo sapiens Human alphaherpesvirus 1 Human betaherpesvirus 5 Human gammaherpesvirus 8 Human immunodeficiency virus 1 JC polyomavirus Murid betaherpesvirus 1 Murid gammaherpesvirus 4 Mus musculus Rattus norvegicus human gammaherpesvirus 4 synthetic construct	32	CEL GPR TXT	Bassel E Sawaya	Feb 12, 2013
GSE48227	Differential expression of microRNAs in adipose stem cells	Non-coding RNA profiling by array	Betapolyomavirus hominis Betapolyomavirus macacae Homo sapiens Human alphaherpesvirus 1 Human alphaherpesvirus 2 Human betaherpesvirus 5 Human gammaherpesvirus 8 Human immunodeficiency virus 1 JC polyomavirus Merkel cell polyomavirus Murid betaherpesvirus 1 Murid gammaherpesvirus 4 Mus musculus Rattus norvegicus human gammaherpesvirus 4 synthetic construct	8	GPR TXT	Min Li	Jun 25, 2013
GSE48228	Differential expression in adipose derived stem cells	Expression profiling by array Non-coding RNA profiling by array	Betapolyomavirus hominis Betapolyomavirus macacae Homo sapiens Human alphaherpesvirus 1 Human alphaherpesvirus 2 Human betaherpesvirus 5 Human gammaherpesvirus 8 Human immunodeficiency virus 1 JC polyomavirus Merkel cell polyomavirus Murid betaherpesvirus 1 Murid gammaherpesvirus 4 Mus musculus Rattus norvegicus human gammaherpesvirus 4 synthetic construct	16	GPR TXT	Min Li	Jun 25, 2013