GEO Browser - GEO

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95 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Populus trichocarpa
GSE28755	Comparative sequence analysis of plant small RNAs	Non-coding RNA profiling by high throughput sequencing	Amborella trichopoda Aristolochia fimbriata Capsicum annuum Carica papaya Chara corallina Chlamydomonas reinhardtii Citrus sinensis Cucurbita maxima Cycas rumphii Erythranthe guttata Ginkgo biloba Gossypium arboreum Hordeum vulgare Lactuca sativa Marsilea quadrifolia Miscanthus x giganteus Musa acuminata Nicotiana tabacum Nuphar advena Panicum virgatum Persea americana Petunia x hybrida Picea abies Populus trichocarpa Setaria italica Silene latifolia Solanum lycopersicum Solanum tuberosum Sorghum bicolor Triticum aestivum Vitis vinifera Volvox carteri Zea mays Zostera marina	99	TXT	Emanuele De Paoli	May 10, 2011
GSE35606	miR-206 integrates multiple components of differentiation pathways to control the transition from growth to differentiation in rhabdomyosarcoma cells (miRNA)	Non-coding RNA profiling by array	Anopheles gambiae Apis mellifera Arabidopsis thaliana Ateles geoffroyi Betapolyomavirus macacae Bombyx mori Bos taurus Caenorhabditis briggsae Caenorhabditis elegans Canis lupus familiaris Danio rerio Drosophila melanogaster Drosophila pseudoobscura Gallid alphaherpesvirus 2 Gallus gallus Glycine max Gorilla gorilla Homo sapiens Human betaherpesvirus 5 Human gammaherpesvirus 8 Lagothrix lagotricha Lemur catta Macaca mulatta Macaca nemestrina Macacine gammaherpesvirus 4 Medicago truncatula Monodelphis domestica Murid gammaherpesvirus 4 Mus musculus Oryza sativa Ovis aries Pan paniscus Pan troglodytes Physcomitrium patens Pongo pygmaeus Populus trichocarpa Rattus norvegicus Saccharum officinarum Saguinus labiatus Schmidtea mediterranea Sorghum bicolor Sus scrofa Takifugu rubripes Tetraodon nigroviridis Xenopus laevis Xenopus tropicalis Zea mays human gammaherpesvirus 4	4	GPR	Janet M. Young	Apr 02, 2012
GSE35921	miR-206 integrates multiple components of differentiation pathways to control the transition from growth to differentiation in rhabdomyosarcoma cells	Expression profiling by array Non-coding RNA profiling by array	Anopheles gambiae Apis mellifera Arabidopsis thaliana Ateles geoffroyi Betapolyomavirus macacae Bombyx mori Bos taurus Caenorhabditis briggsae Caenorhabditis elegans Canis lupus familiaris Danio rerio Drosophila melanogaster Drosophila pseudoobscura Gallid alphaherpesvirus 2 Gallus gallus Glycine max Gorilla gorilla Homo sapiens Human betaherpesvirus 5 Human gammaherpesvirus 8 Lagothrix lagotricha Lemur catta Macaca mulatta Macaca nemestrina Macacine gammaherpesvirus 4 Medicago truncatula Monodelphis domestica Murid gammaherpesvirus 4 Mus musculus Oryza sativa Ovis aries Pan paniscus Pan troglodytes Physcomitrium patens Pongo pygmaeus Populus trichocarpa Rattus norvegicus Saccharum officinarum Saguinus labiatus Schmidtea mediterranea Sorghum bicolor Sus scrofa Takifugu rubripes Tetraodon nigroviridis Xenopus laevis Xenopus tropicalis Zea mays human gammaherpesvirus 4	16	GPR	Janet M. Young	Apr 02, 2012
GSE21152	Conservation and divergence of methylation patterning in plants and animals	Methylation profiling by high throughput sequencing	Apis mellifera Arabidopsis thaliana Chlamydomonas reinhardtii Ciona intestinalis Danio rerio Mus musculus Oryza sativa Populus trichocarpa	14	TXT SRA Run Selector	matteo Pellegrini	Apr 09, 2010
GSE19768	UV-B regulation of microRNAs in maize	Non-coding RNA profiling by array	Arabidopsis thaliana Brassica napus Glycine max Gossypium hirsutum Medicago truncatula Oryza sativa Physcomitrium patens Pinus taeda Populus trichocarpa Saccharum officinarum Selaginella moellendorffii Solanum lycopersicum Sorghum bicolor Triticum aestivum Vitis vinifera Zea mays	2	TXT	Paula Casati	Oct 31, 2013
GSE20263	Small RNAs in different tissues and phloem of oilseed rape under nutrient stress conditions	Non-coding RNA profiling by array	Arabidopsis thaliana Brassica napus Brassica oleracea Brassica rapa Glycine max Medicago truncatula Oryza sativa Physcomitrium patens Pinus taeda Populus trichocarpa Saccharum officinarum Selaginella moellendorffii Sorghum bicolor Triticum aestivum Vitis vinifera Zea mays	10	TXT	Anja Buhtz	Feb 24, 2010
GSE26199	Comparative physiology and transcriptional networks underlying the heat shock response in Populus trichocarpa, Arabidopsis thaliana and Glycine max	Expression profiling by array	Arabidopsis thaliana Glycine max Populus trichocarpa	48	CEL CHP PAIR	David J Weston	Apr 01, 2011
GSE31373	miRNA expression data from low nitrate culture in leaf and root of maize	Non-coding RNA profiling by array	Arabidopsis thaliana Glycine max Medicago truncatula Oryza sativa Physcomitrium patens Populus trichocarpa Saccharum officinarum Sorghum bicolor Zea mays	12		Chuanxiao Xie	Sep 01, 2011
GSE31492	miRNA expression data from low nitrate cultures in maize	Non-coding RNA profiling by array	Arabidopsis thaliana Glycine max Medicago truncatula Oryza sativa Physcomitrium patens Populus trichocarpa Saccharum officinarum Sorghum bicolor Zea mays Zea mays subsp. mays synthetic construct	21	CEL	Chuanxiao Xie	Sep 01, 2011
GSE128434	The prevalence, evolution and chromatin signatures of plant regulatory elements	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana Asparagus officinalis Brachypodium distachyon Eutrema salsugineum Glycine max Hordeum vulgare Oryza sativa Phaseolus vulgaris Populus trichocarpa Setaria viridis Sorghum bicolor Spirodela polyrhiza Zea mays	170	BW SRA Run Selector	Robert J Schmitz	Sep 19, 2019
GSE79526	Widespread natural variation of DNA methylation within angiosperms	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Beta vulgaris Brachypodium distachyon Brassica rapa Cannabis sativa Citrus x clementina Cucumis sativus Erythranthe guttata Eucalyptus grandis Eutrema salsugineum Fragaria vesca Lotus japonicus Malus domestica Manihot esculenta Medicago truncatula Panicum hallii Panicum virgatum Populus trichocarpa Prunus persica Ricinus communis Setaria viridis Sorghum bicolor Theobroma cacao Vitis vinifera	34	TSV SRA Run Selector	Robert J Schmitz	Sep 02, 2016
GSE72155	FASTmC: predictive models for non-reference-based estimations of DNA methylation	Methylation profiling by high throughput sequencing	Brachypodium distachyon Brassica oleracea Erythranthe guttata Populus trichocarpa Sorghum bicolor	5	TSV SRA Run Selector	Adam James Bewick	Aug 17, 2016
GSE51590	Differential expression of miRNAs in Brassica napus root following infection with Plasmodiophora brassicae	Non-coding RNA profiling by array	Brassica napus Cenchrus americanus Cenchrus ciliaris Hordeum vulgare Hordeum vulgare subsp. vulgare Ipomoea batatas Ipomoea nil Lactuca sativa Liriodendron tulipifera Lolium arundinaceum Lotus japonicus Lupinus luteus Malcolmia maritima Malus domestica Manihot esculenta Medicago truncatula Nasturtium officinale Nicotiana benthamiana Nicotiana sylvestris Nicotiana tabacum Nuphar advena Oenocarpus bataua Oryza barthii Oryza brachyantha Oryza nivara Oryza rufipogon Oryza sativa Panicum virgatum Peridictyon sanctum Persea americana Petunia x hybrida Phaseolus coccineus Phaseolus vulgaris Phleum pratense Physcomitrium patens Picea glauca Picea sitchensis Pinus taeda Populus tremula Populus tremula x Populus tremuloides Populus tremuloides Populus trichocarpa Populus trichocarpa x Populus deltoides Prunus armeniaca Prunus persica Prunus salicina Ricinus communis Rorippa indica Sorghum bicolor	4	TXT	Sanjay Gupta	Nov 28, 2013
GSE44570	miRNA expression changes in murine liver tumorigenesis	Non-coding RNA profiling by array	Caenorhabditis elegans Homo sapiens Mus musculus Oryza sativa Populus trichocarpa Rattus norvegicus synthetic construct	16	CEL	Andrei Goga	Sep 01, 2013
GSE180121	Single-cell transcriptomics unveils xylem cell development and evolution	Expression profiling by high throughput sequencing	Eucalyptus grandis Liriodendron chinense Populus trichocarpa Trochodendron aralioides	48	CSV H5 TAR TXT SRA Run Selector	Ying-Chung Jimmy Lin	Dec 25, 2022
GSE9784	Laccaria bicolor S238N gene expression in different tissues	Expression profiling by array	Laccaria bicolor Laccaria bicolor S238N-H82 Populus tremula x Populus alba Populus trichocarpa Pseudotsuga menziesii	11	TXT	Annegret Kohler	Feb 01, 2008
GSE54789	Transcriptome analyses of the Laccaria bicolor-Populus trichocarpa mycorrhiza development	Expression profiling by high throughput sequencing	Laccaria bicolor Populus trichocarpa	7	TXT SRA Run Selector	Annegret Kohler	Feb 08, 2014
GSE62225	Laccaria-Poplar: A Timecourse of Mycorrhizal Root Tip Development	Expression profiling by array	Laccaria bicolor Laccaria bicolor S238N-H82 Populus trichocarpa	19	PAIR	Annegret Kohler	Oct 10, 2014
GSE75437	Transcriptome analyses of the Laccaria bicolor-Populus trichocarpa mycorrhiza	Expression profiling by high throughput sequencing	Laccaria bicolor Populus trichocarpa	2	TXT SRA Run Selector	Annegret Kohler	Apr 03, 2017
GSE175506	Gene expression changes in leaves, roots and Laccaria bicolor mycorrhiza of Poplar treated with ozone or stopped watering.	Expression profiling by high throughput sequencing	Laccaria bicolor Populus trichocarpa	60	TXT SRA Run Selector	Annegret Kohler	Sep 12, 2023