GEO Browser - GEO

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52 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Arabidopsis thaliana		GFF
GSE5974	Interdependence between DNA methylation and transcription	Expression profiling by genome tiling array Genome binding/occupancy profiling by genome tiling array Methylation profiling by array	Arabidopsis thaliana	5	GFF TXT	Jorja Henikoff	Nov 26, 2006
GSE7336	DNA demethylation in the Arabidopsis genome	Methylation profiling by genome tiling array	Arabidopsis thaliana	2	GFF	Jorja Henikoff	Apr 02, 2007
GSE12212	Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks	Methylation profiling by genome tiling array	Arabidopsis thaliana	21	GFF PAIR	Jorja Henikoff	Oct 03, 2008
GSE14570	Extensive demethylation of repetitive elements during seed development underlies gene imprinting	Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing	Arabidopsis thaliana	10	BEDGRAPH GFF PAIR TXT SRA Run Selector	Jorja Henikoff	Jun 12, 2009
GSE15922	Genome-wide demethylation of Arabidopsis endosperm	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	4	GFF TXT SRA Run Selector	Toshiro Nishimura	Jun 16, 2009
GSE19654	INTACT method for gene expression and chromatin profiling of individual cell types within a tissue	Genome binding/occupancy profiling by genome tiling array Expression profiling by genome tiling array	Arabidopsis thaliana	16	BEDGRAPH DAT GFF PAIR PDF	Jorja Henikoff	Jun 14, 2010
GSE21301	Orchestration of development by the bifunctional transcription factor, APETALA2	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	4	BED GFF SRA Run Selector	Felix Ott	Apr 13, 2010
GSE22252	Global identification of Arabidopsis thaliana ARGONAUTE1-associated small RNA.	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	4	GFF TXT SRA Run Selector	James C Carrington	Jun 21, 2010
GSE22953	Genome-wide analysis of H3K9me2 in ibm1, kyp, and cmt3 mutants of Arabidopsis thaliana	Genome binding/occupancy profiling by genome tiling array	Arabidopsis thaliana	6	GFF PAIR	Soichi Inagaki	Sep 21, 2010
GSE23030	Autocatalytic differentiation of epigenetic modifications within the Arabidopsis genome	Genome binding/occupancy profiling by genome tiling array Expression profiling by array	Arabidopsis thaliana	12	CALLS GFF PAIR	Soichi Inagaki	Sep 21, 2010
GSE24474	H3K27 tri-methylation analysis of meristematic tissue (Me) and young leaves (Le) isolated by manual dissection of clv3-9 plants	Genome binding/occupancy profiling by genome tiling array	Arabidopsis thaliana	4	GFF PAIR XLSX	Daniel Schubert	Mar 21, 2011
GSE24507	Gene expression and H3K27 tri-methylation analysis of meristematic tissue (Me) and young leaves (Le) isolated by manual dissection of clv3-9 plants	Expression profiling by array Genome binding/occupancy profiling by genome tiling array	Arabidopsis thaliana	8	GFF PAIR TXT	Daniel Schubert	Apr 20, 2011
GSE38935	Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	10	GFF SRA Run Selector	Toshiro Nishimura	Sep 21, 2012
GSE39045	Deposition of histone variant H2A.Z within gene bodies regulates responsive genes	Expression profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Arabidopsis thaliana	38	GFF SRA Run Selector	Toshiro Nishimura	Dec 13, 2012
GSE40501	Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA.	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	3	GFF SRA Run Selector	Joseph Calarco	Aug 31, 2012
GSE41302	DDM1 and RdDM are the major regulators of transposon DNA methylation in Arabidopsis	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	33	GFF SRA Run Selector	Toshiro Nishimura	Apr 17, 2013
GSE46428	High-throughput sequencing of methylated cytosine enriched by modification-dependent restriction endonuclease MspJI	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	2	GFF TXT SRA Run Selector	Desheng Gong	May 01, 2013
GSE67813	XCT is a novel regulator of chromatin functionally conserved across eukaryotes	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	18	GFF TSV SRA Run Selector	Stacey Harmer	May 01, 2019
GSE68860	Genome-wide single-molecule sequencing of 6-methyladenine in eukaryotes	Methylation profiling by high throughput sequencing Third-party reanalysis	Arabidopsis thaliana Auricularia delicata Caenorhabditis elegans Chlamydomonas reinhardtii Drosophila melanogaster Nannochloropsis oceanica Saccharomyces cerevisiae	11	BW CSV GFF SRA Run Selector	Denis Tolkunov	Sep 01, 2017
GSE69077	Comparative transcriptome analysis in response to heat stress in Arabidopsis thaliana and Arabidopsis lyrata	Expression profiling by high throughput sequencing	Arabidopsis lyrata subsp. lyrata Arabidopsis thaliana	12	GFF XLSX SRA Run Selector	Ales Pecinka	Aug 01, 2015