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123 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Oryza sativa Japonica Group		SRA Run Selector
GSE84885	Small RNA and PARE sequencing in rice (photoperiod sensitive male sterility lines and wild type) panicles under long-day and short-day conditions	Other Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Oryza sativa Japonica Group	36	TXT SRA Run Selector	Blake C. Meyers	Dec 18, 2016
GSE90484	Inhibition of RNA polymerase II allows controlled mobilisation of retrotransposons for plant breeding [rice]	Other	Oryza sativa Japonica Group	4	BIGWIG SRA Run Selector	Etienne Bucher	Jun 26, 2017
GSE95514	Structure-seq2: Sensitive and accurate genome-wide profiling of RNA structure in vivo	Other Expression profiling by high throughput sequencing	Oryza sativa Japonica Group	27	XLS SRA Run Selector	Zhao SU	Jun 08, 2017
GSE99122	Nuclear and cellular mRNA sequencing of 1 cm root tips of 7 days Oryza sativa seedlings	Other	Oryza sativa Japonica Group	3	XLS SRA Run Selector	Mauricio A Reynoso	Sep 19, 2017
GSE107827	de novo re-construction of the core genome from ChIP-Seq for large-genome organisms	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Oryza sativa Oryza sativa Indica Group Oryza sativa Japonica Group Triticum aestivum	26	BED TXT SRA Run Selector	yijing zhang	May 27, 2018
GSE121231	Global Quantitative Mapping of Enhancer Activity in Rice Genome by STARR-seq	Other	Oryza sativa Japonica Group	4	BED TXT SRA Run Selector	Na He	Nov 08, 2018
GSE123109	Single-cell three dimensional genome structures of rice egg, sperm, and unicellular zygote	Other	Oryza sativa Japonica Group	15	PDB TXT SRA Run Selector	shaoli zhou	May 26, 2019
GSE128680	Multiscale gene expression profiling of 1 cm root tips of control and submerged Oryza sativa, Medicago truncatula, Solanum lycopersicum and Solanum pennellii seedlings	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Medicago truncatula Oryza sativa Japonica Group Solanum lycopersicum Solanum pennellii	231	BED BW TXT XLSX SRA Run Selector	Roger B Deal	Sep 19, 2019
GSE30583	Expression data from rice leaves treated or not with fungal elicitors and high-throughput pyrosequencing of endogenous small RNAs from Oryza sativa	Non-coding RNA profiling by high throughput sequencing Expression profiling by array	Oryza sativa Oryza sativa Japonica Group	20	CEL FASTA SRA Run Selector	Sonia Campo	Jan 15, 2014
GSE36696	Comparative transcriptome analysis of transporters, phytohormone and lipid metabolism pathways in response to arsenic stress in rice (Oryza Sativa L.)	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Oryza sativa Japonica Group	20	TXT SRA Run Selector	Lujun Yu	Jan 09, 2013
GSE38480	Transcriptome and methylome interactions in rice hybrids	Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Oryza sativa Indica Group Oryza sativa Indica Group x Oryza sativa Japonica Group Oryza sativa Japonica Group Oryza sativa Japonica Group x Oryza sativa Indica Group	12	TXT SRA Run Selector	Blake C. Meyers	Jul 10, 2012
GSE63367	Expression profiling of small RNAs in wild type and Osaba1-1 rice seedlings	Non-coding RNA profiling by high throughput sequencing	Oryza sativa Japonica Group	2	TXT SRA Run Selector	Qiu Jin-Long	May 31, 2015
GSE65149	Rice interploidy crosses disrupt epigenetic regulation, gene expression, and seed development	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Oryza sativa Japonica Group	7	FPKM_TRACKING TXT SRA Run Selector	Limei Wang	Aug 31, 2018
GSE69242	Next Generation Sequencing Facilitates Small RNA Mediated Rice Resistance to Xoo	Non-coding RNA profiling by high throughput sequencing	Oryza sativa Japonica Group	16	TXT SRA Run Selector	hanming hong	Feb 25, 2016
GSE71925	Variation in the expression of miRNAs and mRNAs in rice (Oryza sativa)	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Oryza sativa Indica Group Oryza sativa Japonica Group	18	TXT SRA Run Selector	Munan Xie	Feb 09, 2017
GSE76798	Transposable elements (TEs) contribute to stress-related long intergenic noncoding RNAs in Plants (I)	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana Oryza sativa Japonica Group Zea mays subsp. mays	4	GTF SRA Run Selector	Dong Wang	Jan 21, 2017
GSE79344	Comparative small RNA analysis of pollen development in autotetraploid and diploid rice	Non-coding RNA profiling by high throughput sequencing	Oryza sativa Japonica Group	6	XLSX SRA Run Selector	andyslee Li	Nov 04, 2016
GSE81436	The ortholog of DDM1 is mainly required for CHG and CG methylation of heterochromatin and is involved in DRM2-mediated CHH methylation that targets mostly genic regions of the rice genome	Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Oryza sativa Japonica Group	17	BAM BW CSV GFF WIG XLS SRA Run Selector	chao zhou	Jun 13, 2016
GSE86215	Characterize novel lncRNAs responding to stresses in Oryza sativa at transcriptional and post-transcriptional levels	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Oryza sativa Japonica Group	38	XLSX SRA Run Selector	Jiapei Yuan	Jun 13, 2018
GSE90479	Analysis of small RNAs revealed differential expressions during the development of pollen and embryo sac and their targets may associate with fertility in autotetraploid rice	Non-coding RNA profiling by high throughput sequencing	Oryza sativa Japonica Group	16	XLSX SRA Run Selector	andyslee Li	Mar 09, 2017