GEO Browser - GEO

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19 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Oryza sativa Japonica Group		XLS
GSE7192	Identification of downstream genes regulated by OsMADS2	Expression profiling by array	Oryza sativa Oryza sativa Japonica Group	3	XLS	Shri Ram Yadav	Jul 31, 2007
GSE35502	Characterizing the role of rice NRAMP5 in Manganese, Iron and Cadmium Transport	Expression profiling by array	Oryza sativa Oryza sativa Japonica Group	20	TXT XLS	Yasuhiro Ishimaru	Feb 03, 2012
GSE68299	Regulation of histone methylation and gene expression reprogramming in rice inflorescence meristem	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa Japonica Group	14	FPKM_TRACKING WIG XLS SRA Run Selector	shaoli zhou	May 14, 2015
GSE81436	The ortholog of DDM1 is mainly required for CHG and CG methylation of heterochromatin and is involved in DRM2-mediated CHH methylation that targets mostly genic regions of the rice genome	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Oryza sativa Japonica Group	17	BAM BW CSV GFF WIG XLS SRA Run Selector	chao zhou	Jun 13, 2016
GSE95514	Structure-seq2: Sensitive and accurate genome-wide profiling of RNA structure in vivo	Expression profiling by high throughput sequencing Other	Oryza sativa Japonica Group	27	XLS SRA Run Selector	Zhao SU	Jun 08, 2017
GSE102494	mRNA sequencing of whole 15 d old Oryza sativa shoots	Expression profiling by high throughput sequencing	Oryza sativa Japonica Group	36	XLS SRA Run Selector	Anna Locke	Sep 01, 2017
GSE99122	Nuclear and cellular mRNA sequencing of 1 cm root tips of 7 days Oryza sativa seedlings	Other	Oryza sativa Japonica Group	3	XLS SRA Run Selector	Mauricio A Reynoso	Sep 19, 2017
GSE104306	WOX11 recruits a histone H3K27me3 demethylase to promote gene expression during shoot development in rice	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa Japonica Group	9	TAR TXT XLS SRA Run Selector	Saifeng Cheng	Jan 21, 2018
GSE111019	Gene expression data obtained from Oryza sativa adventitious roots (2-6 cm behind the root tip) grown in nutrient solution with (30 mgL-1) and without (3 mgL-1) Si	Expression profiling by array	Oryza sativa Oryza sativa Japonica Group	16	CEL XLS	Martin Becker	Feb 23, 2018
GSE102747	Down-regulated expression of OsDCL3b affects small RNA biogenesis and panicle development in rice	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Oryza sativa Japonica Group	8	XLS SRA Run Selector	Dong Wang	Apr 12, 2019
GSE122993	A combined small RNA and transcriptome sequencing analysis illuminates the response of resistance to brown planthopper in rice [RNA-seq]	Expression profiling by high throughput sequencing	Oryza sativa Japonica Group	18	XLS SRA Run Selector	Bo Du	Dec 31, 2019
GSE123079	A combined small RNA and transcriptome sequencing analysis illuminates the response of resistance to brown planthopper in rice [miRNA-seq]	Non-coding RNA profiling by high throughput sequencing	Oryza sativa Japonica Group	26	XLS SRA Run Selector	Bo Du	Dec 31, 2019
GSE176497	RNA-Seq and Electrical Penetration Graph Revealed the Role of Grh1-Mediated Activation of Defense Mechanisms towards Green Rice Leafhopper (Nephotettix cincticeps Uhler) Resistance in Rice (Oryza sativa L.)	Expression profiling by high throughput sequencing	Oryza sativa Oryza sativa Japonica Group	4	GTF TAB TXT XLS SRA Run Selector	ROLLY NKULU KABANGE	Jun 10, 2021
GSE181831	The Evening Complex integrates photoperiod signals to control flowering in rice [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa Japonica Group	3	BIGWIG TXT XLS SRA Run Selector	Philip Wigge	May 24, 2022
GSE181836	The Evening Complex integrates photoperiod signals to control flowering in rice	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa Japonica Group	77	BIGWIG TXT XLS	Philip Wigge	May 24, 2022
GSE224118	The identification and characterization of a plant height and grain length related gene hfr131 in rice	Expression profiling by high throughput sequencing	Oryza sativa Japonica Group	6	XLS	Dengyong Lan	Mar 17, 2023
GSE252767	Identification of endogenous small peptides involved in rice immunity through transcriptomics- and proteomics-based screening	Expression profiling by high throughput sequencing	Oryza sativa Japonica Group	27	XLS	Yoji Kawano	Jan 08, 2024
GSE252768	Identification of endogenous small peptides involved in rice immunity through transcriptomics- and proteomics-based screening	Expression profiling by high throughput sequencing	Oryza sativa Japonica Group	21	XLS	Yoji Kawano	Jan 08, 2024
GSE189428	Epigenetic characterization of carbon dots functions in rice	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Oryza sativa Japonica Group	8	BW CGMAP XLS SRA Run Selector	zhenyu luo	Nov 23, 2024