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Accession Title Series type(s) Organism(s) Samples GDS Supplementary Contact Release date
Remove filtersFilter Remove filterSolanum lycopersicum
GSE101482
ATAC-seq profiling of open chromatin in the root tips of four plant species (Arabidopsis thaliana, Medicago truncatula, Solanum lycopersicum, and Oryza sativa) and two Arabidopsis thaliana cell types (root hair and non-hair epidermal cells)
15 Roger B Deal Jul 26, 2017
GSE124962
The landscape of mRNA translation in tomato roots
  • Link icon Solanum lycopersicum
6 Polly Hsu Jul 05, 2019
GSE128680
Multiscale gene expression profiling of 1 cm root tips of control and submerged Oryza sativa, Medicago truncatula, Solanum lycopersicum and Solanum pennellii seedlings
231 Roger B Deal Sep 19, 2019
GSE149217
Atlas of chromatin accessibility and translatome of tomato and rice root tip cell types
145 Siobhan Brady Mar 24, 2021
GSE164297
Conserved pleiotropy of an ancient plant homeobox gene uncovered by cis-regulatory dissection
  • Link icon Solanum lycopersicum
6 Zachary Lippman Jan 14, 2021
GSE171493
Comprehensive characterization of cistrome and epicistrome involved in fruit ripening [pre-experiment]
  • Link icon Solanum lycopersicum
24 Yu Ma Jun 30, 2023
GSE172249
Comprehensive characterization of cistrome and epicistrome involved in fruit ripening [green fruit]
  • Link icon Solanum lycopersicum
393 Yu Ma Jun 30, 2023
GSE172260
Comprehensive characterization of cistrome and epicistrome involved in fruit ripening [red fruit]
  • Link icon Solanum lycopersicum
393 Yu Ma Jun 30, 2023
GSE173213
Comprehensive characterization of cistrome and epicistrome involved in fruit ripening
  • Link icon Solanum lycopersicum
824 Yu Ma Jun 30, 2023
GSE174416
The VIL gene CRAWLING ELEPHANT controls plant maturation and differentiation in tomato via polycomb silencing
  • Link icon Solanum lycopersicum
18 Roger B Deal May 14, 2021
GSE229117
Priming of tomato mother plants using chemical elicitors linked to whole genome DNA methylation.
  • Link icon Solanum lycopersicum
96 Marie Duhamel Dec 31, 2023
GSE260668
Transcriptome-wide mapping of RNA:protein interactions of GFP-RS2Z35 and GFP-RS2Z36 in tomato (Solanum lycopersicum) leaves.
  • Link icon Solanum lycopersicum
8 Michaela Müller-McNicoll Aug 25, 2024
GSE94903
Critical roles of DNA demethylation in the activation of ripening-induced genes and inhibition of ripening-repressed genes in tomato fruit
  • Link icon Solanum lycopersicum
12 Jian-Kang Zhu May 02, 2017
GSE206355
HSFA1a controls plant heat stress response through its action on the 3D chromatin reorganization of enhancer-promoter interactions [ATAC-seq]
  • Link icon Solanum lycopersicum
6 Jing An Jan 03, 2023
GSE206358
HSFA1a controls plant heat stress response through its action on the 3D chromatin reorganization of enhancer-promoter interactions [ChIP-seq]
  • Link icon Solanum lycopersicum
32 Jing An Jan 03, 2023
GSE206359
HSFA1a controls plant heat stress response through its action on the 3D chromatin reorganization of enhancer-promoter interactions [DAP-seq]
  • Link icon Solanum lycopersicum
3 Jing An Jan 03, 2023
GSE206365
HSFA1a controls plant heat stress response through its action on the 3D chromatin reorganization of enhancer-promoter interactions.
  • Link icon Solanum lycopersicum
79 Jing An Jan 03, 2023
GSE243908
THE EPIGENOME PLAYS A MAJOR ROLE IN TOMATO 3D CHROMATIN ORGANIZATION [ChIP-seq]
  • Link icon Solanum lycopersicum
9 Xiaoning HE Aug 05, 2024
GSE243911
THE EPIGENOME PLAYS A MAJOR ROLE IN TOMATO 3D CHROMATIN ORGANIZATION
  • Link icon Solanum lycopersicum
17 Xiaoning HE Aug 05, 2024
GSE245525
KRYPTONITE shapes TAD-like boundaries through the control of H3K9ac [ChIP-seq]
  • Link icon Solanum lycopersicum
28 Jing An Jul 11, 2024