Accession | Title | Series type(s) | Organism(s) | Samples | GDS | Supplementary | Contact | Release date |
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GSE101482 |
ATAC-seq profiling of open chromatin in the root tips of four plant species (Arabidopsis thaliana, Medicago truncatula, Solanum lycopersicum, and Oryza sativa) and two Arabidopsis thaliana cell types (root hair and non-hair epidermal cells)
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15 | Roger B Deal | Jul 26, 2017 | |||
GSE124962 |
The landscape of mRNA translation in tomato roots
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6 | Polly Hsu | Jul 05, 2019 | ||||
GSE128680 |
Multiscale gene expression profiling of 1 cm root tips of control and submerged Oryza sativa, Medicago truncatula, Solanum lycopersicum and Solanum pennellii seedlings
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231 | Roger B Deal | Sep 19, 2019 | |||
GSE149217 |
Atlas of chromatin accessibility and translatome of tomato and rice root tip cell types
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145 | Siobhan Brady | Mar 24, 2021 | |||
GSE164297 |
Conserved pleiotropy of an ancient plant homeobox gene uncovered by cis-regulatory dissection
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6 | Zachary Lippman | Jan 14, 2021 | ||||
GSE171493 |
Comprehensive characterization of cistrome and epicistrome involved in fruit ripening [pre-experiment]
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24 | Yu Ma | Jun 30, 2023 | ||||
GSE172249 |
Comprehensive characterization of cistrome and epicistrome involved in fruit ripening [green fruit]
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393 | Yu Ma | Jun 30, 2023 | ||||
GSE172260 |
Comprehensive characterization of cistrome and epicistrome involved in fruit ripening [red fruit]
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393 | Yu Ma | Jun 30, 2023 | ||||
GSE173213 |
Comprehensive characterization of cistrome and epicistrome involved in fruit ripening
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824 | Yu Ma | Jun 30, 2023 | ||||
GSE174416 |
The VIL gene CRAWLING ELEPHANT controls plant maturation and differentiation in tomato via polycomb silencing
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18 | Roger B Deal | May 14, 2021 | ||||
GSE229117 |
Priming of tomato mother plants using chemical elicitors linked to whole genome DNA methylation.
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96 | Marie Duhamel | Dec 31, 2023 | ||||
GSE260668 |
Transcriptome-wide mapping of RNA:protein interactions of GFP-RS2Z35 and GFP-RS2Z36 in tomato (Solanum lycopersicum) leaves.
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8 | Michaela Müller-McNicoll | Aug 25, 2024 | ||||
GSE94903 |
Critical roles of DNA demethylation in the activation of ripening-induced genes and inhibition of ripening-repressed genes in tomato fruit
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12 | Jian-Kang Zhu | May 02, 2017 | ||||
GSE206355 |
HSFA1a controls plant heat stress response through its action on the 3D chromatin reorganization of enhancer-promoter interactions [ATAC-seq]
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6 | Jing An | Jan 03, 2023 | ||||
GSE206358 |
HSFA1a controls plant heat stress response through its action on the 3D chromatin reorganization of enhancer-promoter interactions [ChIP-seq]
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32 | Jing An | Jan 03, 2023 | ||||
GSE206359 |
HSFA1a controls plant heat stress response through its action on the 3D chromatin reorganization of enhancer-promoter interactions [DAP-seq]
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3 | Jing An | Jan 03, 2023 | ||||
GSE206365 |
HSFA1a controls plant heat stress response through its action on the 3D chromatin reorganization of enhancer-promoter interactions.
|
79 | Jing An | Jan 03, 2023 | ||||
GSE243908 |
THE EPIGENOME PLAYS A MAJOR ROLE IN TOMATO 3D CHROMATIN ORGANIZATION [ChIP-seq]
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9 | Xiaoning HE | Aug 05, 2024 | ||||
GSE243911 |
THE EPIGENOME PLAYS A MAJOR ROLE IN TOMATO 3D CHROMATIN ORGANIZATION
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17 | Xiaoning HE | Aug 05, 2024 | ||||
GSE245525 |
KRYPTONITE shapes TAD-like boundaries through the control of H3K9ac [ChIP-seq]
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28 | Jing An | Jul 11, 2024 |