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1177 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Oryza sativa
GSE197401	search for downstream target genes of HTG3 based on RNA seq data	Expression profiling by high throughput sequencing	Oryza sativa	14	TXT	Nai Wu	Feb 28, 2022
GSE115056	sRNA-seq datasets of OsRDR3 transgenic plants.	Non-coding RNA profiling by high throughput sequencing	Oryza sativa	6	TXT SRA Run Selector	Shivaprasad Padubidri V.	Jan 31, 2021
GSE111350	root hair-expressed genes in rice	Expression profiling by array	Oryza sativa	2	TXT	Moon Sunok	Mar 03, 2018
GSE16507	rice whole transcriptome surveyed by high throughput sequencing technology	Expression profiling by SAGE	Oryza sativa	2		Guangwu Guo	Mar 01, 2010
GSE16631	rice whole transcriptome surveyed by RNA-Seq and Paired-end technology	Non-coding RNA profiling by high throughput sequencing	Oryza sativa	36	TXT SRA Run Selector	Guangwu Guo	Mar 01, 2010
GSE46334	ovation-Transcriptomic study of rice seed ageing	Expression profiling by array	Oryza sativa	6	CEL	stephanie huguet	Sep 01, 2013
GSE186906	miRNA profiling of rice developing leaves in response to elevated CO2	Non-coding RNA profiling by high throughput sequencing	Oryza sativa	8	TXT SRA Run Selector	Yonghyun Kim	Apr 06, 2022
GSE31492	miRNA expression data from low nitrate cultures in maize	Non-coding RNA profiling by array	Arabidopsis thaliana Glycine max Medicago truncatula Oryza sativa Physcomitrium patens Populus trichocarpa Saccharum officinarum Sorghum bicolor Zea mays Zea mays subsp. mays synthetic construct	21	CEL	Chuanxiao Xie	Sep 01, 2011
GSE31373	miRNA expression data from low nitrate culture in leaf and root of maize	Non-coding RNA profiling by array	Arabidopsis thaliana Glycine max Medicago truncatula Oryza sativa Physcomitrium patens Populus trichocarpa Saccharum officinarum Sorghum bicolor Zea mays	12		Chuanxiao Xie	Sep 01, 2011
GSE44570	miRNA expression changes in murine liver tumorigenesis	Non-coding RNA profiling by array	Caenorhabditis elegans Homo sapiens Mus musculus Oryza sativa Populus trichocarpa Rattus norvegicus synthetic construct	16	CEL	Andrei Goga	Sep 01, 2013
GSE72694	miR396-OsGRF6 module controls rice inflorescence architecture	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	4	TXT SRA Run Selector	Wang Kun	May 13, 2016
GSE35606	miR-206 integrates multiple components of differentiation pathways to control the transition from growth to differentiation in rhabdomyosarcoma cells (miRNA)	Non-coding RNA profiling by array	Anopheles gambiae Apis mellifera Arabidopsis thaliana Ateles geoffroyi Betapolyomavirus macacae Bombyx mori Bos taurus Caenorhabditis briggsae Caenorhabditis elegans Canis lupus familiaris Danio rerio Drosophila melanogaster Drosophila pseudoobscura Gallid alphaherpesvirus 2 Gallus gallus Glycine max Gorilla gorilla Homo sapiens Human betaherpesvirus 5 Human gammaherpesvirus 8 Lagothrix lagotricha Lemur catta Macaca mulatta Macaca nemestrina Macacine gammaherpesvirus 4 Medicago truncatula Monodelphis domestica Murid gammaherpesvirus 4 Mus musculus Oryza sativa Ovis aries Pan paniscus Pan troglodytes Physcomitrium patens Pongo pygmaeus Populus trichocarpa Rattus norvegicus Saccharum officinarum Saguinus labiatus Schmidtea mediterranea Sorghum bicolor Sus scrofa Takifugu rubripes Tetraodon nigroviridis Xenopus laevis Xenopus tropicalis Zea mays human gammaherpesvirus 4	4	GPR	Janet M. Young	Apr 02, 2012
GSE35921	miR-206 integrates multiple components of differentiation pathways to control the transition from growth to differentiation in rhabdomyosarcoma cells	Expression profiling by array Non-coding RNA profiling by array	Anopheles gambiae Apis mellifera Arabidopsis thaliana Ateles geoffroyi Betapolyomavirus macacae Bombyx mori Bos taurus Caenorhabditis briggsae Caenorhabditis elegans Canis lupus familiaris Danio rerio Drosophila melanogaster Drosophila pseudoobscura Gallid alphaherpesvirus 2 Gallus gallus Glycine max Gorilla gorilla Homo sapiens Human betaherpesvirus 5 Human gammaherpesvirus 8 Lagothrix lagotricha Lemur catta Macaca mulatta Macaca nemestrina Macacine gammaherpesvirus 4 Medicago truncatula Monodelphis domestica Murid gammaherpesvirus 4 Mus musculus Oryza sativa Ovis aries Pan paniscus Pan troglodytes Physcomitrium patens Pongo pygmaeus Populus trichocarpa Rattus norvegicus Saccharum officinarum Saguinus labiatus Schmidtea mediterranea Sorghum bicolor Sus scrofa Takifugu rubripes Tetraodon nigroviridis Xenopus laevis Xenopus tropicalis Zea mays human gammaherpesvirus 4	16	GPR	Janet M. Young	Apr 02, 2012
GSE232779	mRNA cleavage by 21-nt phasiRNAs dependent on AGO1d is important for temperature-sensitive male sterility in rice	Expression profiling by high throughput sequencing	Oryza sativa	12	XLSX	Chuanlin Shi	Jan 01, 2024
GSE219068	mDRIP-seq: a high-throughput method for R-loop mapping and quantitative assessment	Other	Arabidopsis thaliana Escherichia coli Homo sapiens Mus musculus Oryza sativa Saccharomyces cerevisiae	356	BW	Changbin Sun	Jun 11, 2024
GSE219071	mDRIP-seq is a high-throughput method for quantitative R-loop landscape profiling	Other Expression profiling by high throughput sequencing	Arabidopsis thaliana Escherichia coli Homo sapiens Mus musculus Oryza sativa Saccharomyces cerevisiae	384	BW TXT	Changbin Sun	Jun 11, 2024
GSE46342	ivt-Transcriptomic study of rice seed ageing	Expression profiling by array	Oryza sativa	12	CEL	stephanie huguet	Sep 01, 2013
GSE171578	iPOTs: Internet of Things-based pot system controlling optional treatment of soil water condition for plant phenotyping under drought stress	Expression profiling by high throughput sequencing	Oryza sativa	36	TSV SRA Run Selector	Taiji Kawakatsu	Aug 24, 2021
GSE27988	genome-wide gene expression profiling of rice pollen in defferent developmetn stages	Expression profiling by array	Oryza sativa	24	CEL	liqin wei	Mar 18, 2011
GSE116581	fruitENCODE: An encyclopedia of DNA elements for fruit ripening	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana Carica papaya Citrullus lanatus Cucumis melo Cucumis sativus Fragaria vesca Malus domestica Musa acuminata AAA Group Oryza sativa Prunus persica Pyrus x bretschneideri Solanum lycopersicum Vitis vinifera	282	BW NARROWPEAK TBI TXT SRA Run Selector	Silin Zhong	Jul 04, 2018