GEO Browser - GEO

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39 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Nematostella vectensis
GSE46488	Evolutionary conservation of the eumetazoan gene regulatory landscape	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Nematostella vectensis	29	BED SRA Run Selector	Michaela Schwaiger	Dec 02, 2013
GSE73545	The evolution of DNA methylation inheritance and programming in animals	Methylation profiling by high throughput sequencing	Apis mellifera Ciona savignyi Nematostella vectensis Strongylocentrotus purpuratus	22	BED SRA Run Selector	jiang liu	Nov 17, 2019
GSE182573	An ancestral Wnt-Brachyury feedback loop and vertebrate-specific recruitment of mesoderm-determining target genes revealed by comparative Brachyury target screens	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Nematostella vectensis	17	BED TXT SRA Run Selector	Rohit Anil Dnyansagar	Nov 30, 2022
GSE135498	Sequencing short capped RNAs captures acute transcription initiation and identifies promoter and distal regulatory elements across eukaryotes from total RNA	Other	Capsaspora owczarzaki Homo sapiens Mus musculus Nematostella vectensis Neurospora crassa Oryza sativa	40	BIGWIG BW TXT SRA Run Selector	Christopher Benner	Sep 16, 2019
GSE95723	Cnidarian cell type diversity revealed by whole-organism single-cell RNA-seq analysis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Nematostella vectensis	8	BW TXT XLSX SRA Run Selector	Arnau Sebe-Pedros	May 31, 2018
GSE124016	Convergent evolution of a vertebrate-like methylome in a marine sponge	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Amphimedon queenslandica Mnemiopsis leidyi Nematostella vectensis Sycon ciliatum	36	CGMAP TXT SRA Run Selector	Alex de Mendoza	Aug 02, 2019
GSE173786	Spatial transcriptomics reveals a conserved segment polarity program that governs muscle patterning in Nematostella vectensis	Expression profiling by high throughput sequencing	Nematostella vectensis	31	CSV H5 SRA Run Selector	Shiyuan (Cynthia) Chen	Jun 12, 2023
GSE200198	A time course of sea anemone development	Expression profiling by high throughput sequencing	Nematostella vectensis	16	CSV GTF MTX TSV	Alison G Cole	Sep 09, 2022
GSE71086	Nematostella vectensis high resolution developmental transcriptomic time-course	Expression profiling by high throughput sequencing	Nematostella vectensis	123	FASTA TXT SRA Run Selector	Itai Yanai	Feb 18, 2016
GSE242174	Reconstructing the gene regulatory network that shaped the evolution of larval sensory structure with a long ciliary tuft in Cnidaria.	Expression profiling by high throughput sequencing	Acropora millepora Acropora tenuis Aurelia aurita Nematostella vectensis	18	FASTA TXT	vengamanaidu modepalli	Jan 17, 2024
GSE19824	Genome-wide evolutionary analysis of eukaryotic DNA methylation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Apis mellifera Bombyx mori Chlorella variabilis Ciona intestinalis Coprinopsis cinerea Drosophila melanogaster Laccaria bicolor Nematostella vectensis Oryza sativa Phycomyces blakesleeanus Physcomitrium patens Postia placenta Selaginella moellendorffii Tetraodon nigroviridis Tribolium castaneum Uncinocarpus reesii Volvox carteri	33	GFF TXT SRA Run Selector	Toshiro Nishimura	Apr 15, 2010
GSE168938	Microbiome mediated plasticity promotes thermal adaptation in Nematostella vectensis	Expression profiling by high throughput sequencing	Nematostella vectensis	15	GFF3 TXT SRA Run Selector	Sebastian Fraune	Feb 04, 2022
GSE213278	Graded FGF activity patterns distinct cell types within the apical sensory organ of the sea anemone Nematostella vectensis	Expression profiling by high throughput sequencing	Nematostella vectensis	1	H5	Shiyuan (Cynthia) Chen	Apr 01, 2024
GSE154105	Sea anemone single cell tissue profiling [scRNA-seq]	Expression profiling by high throughput sequencing	Nematostella vectensis	4	MTX TSV SRA Run Selector	Alison G Cole	Sep 09, 2022
GSE154477	Transcriptomic profiling of sea anemone tissues	Expression profiling by high throughput sequencing	Nematostella vectensis	8	MTX TSV	Alison G Cole	Sep 14, 2022
GSE218419	The brain regulatory program predates central nervous system evolution	Expression profiling by high throughput sequencing	Nematostella vectensis	4	MTX RDATA TSV	Michael John Layden	Nov 22, 2022
GSE253068	Nanos-2 mutant line of the sea anemone Nematostella vectensis	Expression profiling by high throughput sequencing	Nematostella vectensis	1	MTX TSV	Alison G Cole	Aug 21, 2024
GSE70185	The mid-developmental transition and the evolution of animal body plans	Expression profiling by high throughput sequencing	Amphimedon queenslandica Caenorhabditis elegans Danio rerio Drosophila melanogaster Hypsibius dujardini Mnemiopsis leidyi Nematostella vectensis Platynereis dumerilii Schmidtea polychroa Strongylocentrotus purpuratus	1143	PDF XLSX	Itai Yanai	Feb 18, 2016
GSE166977	ACME dissociation: a versatile cell fixation-dissociation method for single-cell transcriptomics	Expression profiling by high throughput sequencing	Nematostella vectensis	1	RDS SRA Run Selector	Arnau Sebe-Pedros	Apr 01, 2021
GSE12578	The Early Origins and Evolution of microRNAs and piRNAs in Animals	Non-coding RNA profiling by high throughput sequencing	Amphimedon queenslandica Monosiga brevicollis Nematostella vectensis Trichoplax adhaerens	17	TXT SRA Run Selector	andrew grimson	Oct 01, 2008