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3998 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Saccharomyces cerevisiae
GSE89337	Regulation of DNA replication time is crucial for appropriate gene expression	Other	Zygosaccharomyces rouxii Saccharomyces cerevisiae Naumovozyma castellii Nakaseomyces glabratus Lachancea kluyveri Kluyveromyces lactis Henningerozyma blattae	14	FASTA WIG SRA Run Selector	Conrad A Nieduszynski	Jun 28, 2017
GSE21960	The role of nucleosome positioning in the evolution of gene regulation	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Yarrowia lipolytica Saccharomyces paradoxus Saccharomyces mikatae Saccharomyces cerevisiae Saccharomyces bayanus Naumovozyma castellii Nakaseomyces glabratus Lachancea waltii Lachancea kluyveri NRRL Y-12651 Kluyveromyces lactis Debaryomyces hansenii Candida albicans	61	TXT WIG	Alex M Tsankov	Jul 06, 2010
GSE22211	Genome-wide nucleosome position data for 12 yeast species	Genome binding/occupancy profiling by high throughput sequencing	Yarrowia lipolytica Saccharomyces paradoxus Saccharomyces mikatae Saccharomyces cerevisiae Saccharomyces bayanus Naumovozyma castellii Nakaseomyces glabratus Lachancea waltii Lachancea kluyveri NRRL Y-12651 Kluyveromyces lactis Debaryomyces hansenii Candida albicans	13	TXT WIG SRA Run Selector	Alex M Tsankov	Jul 06, 2010
GSE36253	Evolutionary principles of modular gene regulation in Yeasts	Expression profiling by array	Yarrowia lipolytica Vanderwaltozyma polyspora Schizosaccharomyces pombe Schizosaccharomyces japonicus Saccharomyces paradoxus Saccharomyces mikatae Saccharomyces cerevisiae Saccharomyces bayanus Naumovozyma castellii Nakaseomyces glabratus Lachancea waltii Lachancea kluyveri NRRL Y-12651 Lachancea kluyveri Kluyveromyces lactis Debaryomyces hansenii Candida albicans	422	TXT	Dawn Thompson	Jun 20, 2013
GSE163866	The evolution, evolvability, and engineering of gene regulatory DNA [RNA-seq]	Expression profiling by high throughput sequencing	Yarrowia lipolytica Schizosaccharomyces pombe Schizosaccharomyces octosporus Schizosaccharomyces japonicus Saccharomyces cerevisiae Saccharomyces bayanus Naumovozyma castellii Nakaseomyces glabratus Lachancea waltii Kluyveromyces lactis Candida albicans	11	TXT SRA Run Selector	Carl G de Boer	Dec 23, 2021
GSE52809	Poly(A)-tail profiling reveals an embryonic switch in translational control	Expression profiling by high throughput sequencing	Xenopus laevis Schizosaccharomyces pombe Saccharomyces cerevisiae Mus musculus Homo sapiens Drosophila melanogaster Danio rerio Arabidopsis thaliana	64	TXT SRA Run Selector	Stephen Eichhorn	Jan 29, 2014
GSE169088	3D genomics across the tree of life reveals condensin II as a determinant of architecture type	Other	Xenopus laevis Triticum aestivum Strongylocentrotus purpuratus Saccharomyces cerevisiae Python bivittatus Pygocentrus nattereri Pleurobrachia bachei Notamacropus eugenii Muntiacus reevesi Muntiacus muntjak Lethenteron camtschaticum Hypsibius dujardini Homo sapiens Gallus gallus Drosophila melanogaster Culex quinquefasciatus Cristatella mucedo Clonorchis sinensis Ciona intestinalis Chiloscyllium punctatum Caenorhabditis elegans Branchiostoma lanceolatum Arachis hypogaea Aplysia californica Agaricus bisporus Aedes aegypti Acropora millepora	32	BEDPE FASTA HIC VCF WIG SRA Run Selector	Olga Dudchenko	Apr 23, 2021
GSE112636	Diversity of cytosine methylation across the fungi tree of life	Methylation profiling by high throughput sequencing Third-party reanalysis	Wolfiporia cocos Uncinocarpus reesii Tilletiopsis washingtonensis Syncephalis fuscata Sporobolomyces roseus Spinellus fusiger Saccharomyces cerevisiae Radiomyces spectabilis Pyricularia oryzae KJ201 Pseudogymnoascus destructans Postia placenta Podospora anserina Pleurotus ostreatus Plenodomus lingam Phycomyces blakesleeanus Phanerodontia chrysosporium Parasitella parasitica Neurospora crassa Mixia osmundae Microbotryum lychnidis-dioicae Metarhizium robertsii Lobosporangium transversale Laccaria bicolor Kirkomyces cordensis Heterobasidion irregulare Hesseltinella vesiculosa Fusarium fujikuroi Flammula alnicola Cryptococcus neoformans serotype A Cordyceps militaris Coprinopsis cinerea Coemansia spiralis Coemansia reversa Clavispora lusitaniae Candidozyma auris Candida albicans Botrytis cinerea Aureobasidium pullulans Aspergillus flavus Agaricus bisporus	31	TSV TXT XLS SRA Run Selector	Robert J Schmitz	Feb 18, 2019
GSE17871	Small RNAs in budding yeast	Non-coding RNA profiling by high throughput sequencing	Vanderwaltozyma polyspora Saccharomyces cerevisiae Saccharomyces bayanus Naumovozyma castellii Candida albicans	9	TXT SRA Run Selector	David Eric Weinberg	Sep 10, 2009
GSE17872	RNAi in budding yeast	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Vanderwaltozyma polyspora Saccharomyces cerevisiae Saccharomyces bayanus Naumovozyma castellii Candida albicans	15	TXT	David Eric Weinberg	Sep 10, 2009
GSE110582	Whole genome mapping of DNA G-quadruplexes in multiple species by G4-seq	Other	Trypanosoma brucei Saccharomyces cerevisiae Plasmodium falciparum Mus musculus Leishmania major Homo sapiens Escherichia coli Drosophila melanogaster Danio rerio Cereibacter sphaeroides Caenorhabditis elegans Arabidopsis thaliana	24	BED BEDGRAPH SRA Run Selector	Giovanni Marsico	Aug 01, 2018
GSE135826	Dynamic RNA acetylation revealed by quantitative cross-evolutionary mapping	Other	Thermococcus sp. AM4 Thermococcus kodakarensis Saccharomyces cerevisiae Saccharolobus solfataricus Pyrococcus furiosus Methanocaldococcus jannaschii Homo sapiens	96	XLSX SRA Run Selector	Aldema Sas-Chen	Jul 23, 2020
GSE98331	Structural basis for 5’-ETS recognition by Utp4 at the early stages of ribosome biogenesis	Other	Thermochaetoides thermophila Saccharomyces cerevisiae	2	FASTA PILEUP SRA Run Selector	Ed Hurt	Jun 06, 2017
GSE133361	Determination of isoform-specific RNA structure with nanopore long reads	Other	Tetrahymena thermophila Saccharomyces cerevisiae Oceanobacillus iheyensis Homo sapiens Dengue virus Bacillus subtilis	21	CSV TAR TXT XLSX SRA Run Selector	Aw Jong Ghut Ashley	Sep 09, 2020
GSE65889	Novel nucleosomal particles containing core histones and linker DNA but no histone H1	Genome binding/occupancy profiling by high throughput sequencing	Synthetic plasmid Saccharomyces cerevisiae Mus musculus	31	BW FA TXT SRA Run Selector	David Johannes Clark	Sep 23, 2015
GSE12349	A library of yeast transcription factor motifs	Genome binding/occupancy profiling by genome tiling array Other	synthetic construct Saccharomyces cerevisiae	170	GFF PAIR TIFF TXT	Lourdes Pena-Castillo	Dec 26, 2008
GSE13622	The DNA-Encoded Nucleosome Organization of a Eukaryotic Genome	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	synthetic construct Saccharomyces cerevisiae Mus musculus Homo sapiens	8	TAB TXT SRA Run Selector	Desiree Tillo	Dec 18, 2008
GSE34306	Curated collection of yeast transcription factor DNA binding specificity data reveals novel structural and gene regulatory insights	Other	synthetic construct Saccharomyces cerevisiae	27		Kevin F Murphy	Dec 10, 2011
GSE77709	High-throughput measurements of fitness effects of mutations in the yeast U3 snoRNA	Other	synthetic construct Saccharomyces cerevisiae	37	TXT SRA Run Selector	Olga Anna Puchta	Feb 09, 2016
GSE99723	Pho4 binding to JokerCAKE 8-mer library	Other	synthetic construct Saccharomyces cerevisiae	1	CSV	Polly Morrell Fordyce	Jun 16, 2017