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82 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Neurospora crassa		SRA Run Selector
GSE97157	RNA-seq analysis of wild type and upf1 knockout strains in the filamentous fungus Neurospora crassa.	Expression profiling by high throughput sequencing	Neurospora crassa	2	TXT SRA Run Selector	yin Zhang	Aug 02, 2017
GSE92848	A Fungal Transcription Factor Essential for Starch Degradation Regulates Primary Carbon and Nitrogen Metabolism and Amino Acid Biosynthesis	Expression profiling by high throughput sequencing	Neurospora crassa	21	TXT SRA Run Selector	Yi Xiong	Apr 09, 2017
GSE128317	Evolutionarily ancient BAH-PHD protein mediates Polycomb silencing in Neurospora crassa	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Third-party reanalysis	Neurospora crassa	16	BIGWIG TXT SRA Run Selector	Elizabeth Toomey Wiles	Apr 15, 2020
GSE134445	The histone H3G34R mutation disrupts the epigenome via catalytic inactivation of the ASH1 H3K36 methyltransferase [ATAC-seq]	Methylation profiling by high throughput sequencing	Neurospora crassa	5	BIGWIG IGV SRA Run Selector	Elizabeth Toomey Wiles	Oct 19, 2022
GSE134449	The histone H3G34R mutation disrupts the epigenome via catalytic inactivation of the ASH1 H3K36 methyltransferase [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Neurospora crassa	12	BIGWIG TDF SRA Run Selector	Elizabeth Toomey Wiles	Oct 19, 2022
GSE134451	The histone H3G34R mutation disrupts the epigenome via catalytic inactivation of the ASH1 H3K36 methyltransferase [RNA-seq]	Expression profiling by high throughput sequencing	Neurospora crassa	3	TAB XLSX SRA Run Selector	Elizabeth Toomey Wiles	Oct 19, 2022
GSE157186	RCO-3 and COL-26 form an external-to-internal module that regulates the dual-affinity glucose transport system in Neurospora crassa	Expression profiling by high throughput sequencing	Neurospora crassa	24	TXT SRA Run Selector	chaoguang Tian	Sep 01, 2020
GSE88985	The transcription factor PDR-1 is a multi-functional regulator and key component of pectin deconstruction and catabolism in Neurospora crassa	Expression profiling by high throughput sequencing	Neurospora crassa	20	CSV TXT SRA Run Selector	Nils Thieme	May 19, 2017
GSE168277	The ACF chromatin remodeling complex is essential for Polycomb repression	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Neurospora crassa	59	BW TXT SRA Run Selector	Hideki Tanizawa	Mar 08, 2022
GSE184024	Next Generation Sequncimg Facilitates Transcriptional Analysis of ∆mak-2, ∆mak-1 and Wild Type of Neurospora crassa	Expression profiling by high throughput sequencing	Neurospora crassa	6	XLS SRA Run Selector	Xianyun Sun	Dec 15, 2021
GSE53534	Genome-wide characterization of light-regulated genes in Neurospora crassa	Expression profiling by high throughput sequencing	Neurospora crassa	10	TXT SRA Run Selector	Kristina M Smith	Aug 01, 2014
GSE68897	Loss of HP1 causes depletion of H3K27me3 from facultative heterochromatin and gain of H3K27me2 at constitutive heterochromatin	Genome binding/occupancy profiling by high throughput sequencing	Neurospora crassa	27	TDF SRA Run Selector	Eric Selker	Nov 03, 2015
GSE104019	Telomere repeats induce domains of H3K27 methylation in Neurospora	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Neurospora crassa	34	BEDPE TDF TSV TXT SRA Run Selector	Eric Selker	Dec 29, 2017
GSE137018	Loss of Lysine-Specific Demethylase 1 (LSD1) Drives Aberrant Heterochromatin Formation in Neurospora crassa	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Third-party reanalysis	Neurospora crassa	16	BED BIGWIG IGV TDF TXT SRA Run Selector	Eric U Selker	Aug 18, 2020
GSE140787	Identification of a novel fungal PRC2 accessory subunit	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Neurospora crassa	8	BIGWIG TXT SRA Run Selector	Eric Selker	Mar 30, 2020
GSE143603	A Light-Inducible Strain for Genome-Wide Histone Turnover Profiling in Neurospora crassa	Genome binding/occupancy profiling by high throughput sequencing	Neurospora crassa	10	BED BIGWIG SRA Run Selector	Eric U Selker	Jan 01, 2021
GSE70518	Neurospora MUS-30 is an LSH/DDM1 homolog required for normal genome maintenance	Methylation profiling by high throughput sequencing	Neurospora crassa	7	TSV SRA Run Selector	Robert J Schmitz	Dec 21, 2015
GSE76982	Histone H1 limits DNA methylation in Neurospora	Methylation profiling by high throughput sequencing	Neurospora crassa	7	TSV TXT SRA Run Selector	Robert J Schmitz	Apr 20, 2016
GSE112636	Diversity of cytosine methylation across the fungi tree of life	Methylation profiling by high throughput sequencing Third-party reanalysis	Agaricus bisporus Aspergillus flavus Aureobasidium pullulans Botrytis cinerea Candida albicans Candidozyma auris Clavispora lusitaniae Coemansia reversa Coemansia spiralis Coprinopsis cinerea Cordyceps militaris Cryptococcus neoformans var. grubii Flammula alnicola Fusarium fujikuroi Hesseltinella vesiculosa Heterobasidion irregulare Kirkomyces cordensis Laccaria bicolor Lobosporangium transversale Metarhizium robertsii Microbotryum lychnidis-dioicae Mixia osmundae Neurospora crassa Parasitella parasitica Phanerodontia chrysosporium Phycomyces blakesleeanus Plenodomus lingam Pleurotus ostreatus Podospora anserina Postia placenta Pseudogymnoascus destructans Pyricularia oryzae KJ201 Radiomyces spectabilis Saccharomyces cerevisiae Spinellus fusiger Sporobolomyces roseus Syncephalis fuscata Tilletiopsis washingtonensis Uncinocarpus reesii Wolfiporia cocos	31	TSV TXT XLS SRA Run Selector	Robert J Schmitz	Feb 18, 2019
GSE100539	Comparative transcriptome of Neurospora crassa strains	Expression profiling by high throughput sequencing	Neurospora crassa	12	CSV TXT SRA Run Selector	Pablo Rodrigo Sanches	Apr 20, 2018