GEO Browser - GEO

Series

Samples

Platforms

DataSets

82 series

Export

Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Neurospora crassa		SRA Run Selector
GSE112636	Diversity of cytosine methylation across the fungi tree of life	Third-party reanalysis Methylation profiling by high throughput sequencing	Agaricus bisporus Aspergillus flavus Aureobasidium pullulans Botrytis cinerea Candida albicans Candidozyma auris Clavispora lusitaniae Coemansia reversa Coemansia spiralis Coprinopsis cinerea Cordyceps militaris Cryptococcus neoformans serotype A Flammula alnicola Fusarium fujikuroi Hesseltinella vesiculosa Heterobasidion irregulare Kirkomyces cordensis Laccaria bicolor Lobosporangium transversale Metarhizium robertsii Microbotryum lychnidis-dioicae Mixia osmundae Neurospora crassa Parasitella parasitica Phanerodontia chrysosporium Phycomyces blakesleeanus Plenodomus lingam Pleurotus ostreatus Podospora anserina Postia placenta Pseudogymnoascus destructans Pyricularia oryzae KJ201 Radiomyces spectabilis Saccharomyces cerevisiae Spinellus fusiger Sporobolomyces roseus Syncephalis fuscata Tilletiopsis washingtonensis Uncinocarpus reesii Wolfiporia cocos	31	TSV TXT XLS SRA Run Selector	Robert J Schmitz	Feb 18, 2019
GSE128317	Evolutionarily ancient BAH-PHD protein mediates Polycomb silencing in Neurospora crassa	Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Neurospora crassa	16	BIGWIG TXT SRA Run Selector	Elizabeth Toomey Wiles	Apr 15, 2020
GSE137018	Loss of Lysine-Specific Demethylase 1 (LSD1) Drives Aberrant Heterochromatin Formation in Neurospora crassa	Third-party reanalysis Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Neurospora crassa	16	BED BIGWIG IGV TDF TXT SRA Run Selector	Eric U Selker	Aug 18, 2020
GSE71024	HiC of Wild Type Neurospora crassa and mutants deficient in heterochromatin formation	Other Genome binding/occupancy profiling by high throughput sequencing	Neurospora crassa	5	FASTA GTF TDF TXT SRA Run Selector	Andrew David Klocko	May 19, 2016
GSE71032	Codon usage influences the local rate of translation elongation to regulate co-translational protein folding	Other Expression profiling by high throughput sequencing	Neurospora crassa	8	BED FA WIG SRA Run Selector	Yunkun Dang	Jul 18, 2015
GSE82222	Neurospora crassa genome organization requires subtelomeric facultative heterochromatin	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Neurospora crassa	16	BCF FASTA GTF TDF TXT XLSX SRA Run Selector	Andrew David Klocko	Oct 27, 2016
GSE130155	Effect of adat2 silencing in Neurospora crassa on translation kinetics and transcriptome	Other Expression profiling by high throughput sequencing	Neurospora crassa	12	TXT SRA Run Selector	xueliang lyu	May 22, 2020
GSE135498	Sequencing short capped RNAs captures acute transcription initiation and identifies promoter and distal regulatory elements across eukaryotes from total RNA	Other	Capsaspora owczarzaki Homo sapiens Mus musculus Nematostella vectensis Neurospora crassa Oryza sativa	40	BIGWIG BW TXT SRA Run Selector	Christopher Benner	Sep 16, 2019
GSE173593	The genome organization of Neurospora crassa at high-resolution uncovers principles of fungal chromosome topology	Other	Neurospora crassa	10	FASTA GTF H5 SRA Run Selector	Andrew David Klocko	Mar 01, 2022
GSE181565	Circadian Clock-Controlled Translation of Specific mRNAs in Neurospora crassa Requires Rhythmic eIF2α Activity and P-body Sequestration [Ribo-seq]	Other	Neurospora crassa	80	TXT SRA Run Selector	Deborah Bell-Pedersen	Sep 23, 2022
GSE21175	Diverse pathways generate microRNA-like RNAs and Dicer-independent small interfering RNAs in fungi	Non-coding RNA profiling by high throughput sequencing	Neurospora crassa	1	GFF TXT SRA Run Selector	Craig Mello	Jul 01, 2010
GSE38334	The Translin-TRAX complex/C3PO is a ribonuclease in tRNA processing	Non-coding RNA profiling by high throughput sequencing	Neurospora crassa	2	FA SRA Run Selector	Craig Mello	Jul 30, 2012
GSE47666	Convergent transcription induces dynamic DNA methylation at disiRNA loci	Non-coding RNA profiling by high throughput sequencing	Neurospora crassa	2	GFF SRA Run Selector	Yunkun Dang	Aug 01, 2013
GSE98911	Nucleosome Positioning by an Evolutionarily Conserved Chromatin Remodeler Prevents Aberrant DNA Methylation in Neurospora.	Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Neurospora crassa	19	FASTA IGV TDF TXT VCF WIG SRA Run Selector	Andrew David Klocko	Jan 16, 2019
GSE99245	The coding and noncoding transcriptome of Neurospora crassa	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Neurospora crassa	8	BIGWIG TXT SRA Run Selector	Michael Brunner	Jan 23, 2018
GSE61174	Bisulfite-seq from Neurospora crassa a wild type (WT) strain grown in minimum medium, a dim-3 strain grown in minimum medium, and a dim-3 strain grown with supplemented histidine	Methylation profiling by high throughput sequencing	Neurospora crassa	3	WIG SRA Run Selector	Andrew David Klocko	Mar 22, 2015
GSE70518	Neurospora MUS-30 is an LSH/DDM1 homolog required for normal genome maintenance	Methylation profiling by high throughput sequencing	Neurospora crassa	7	TSV SRA Run Selector	Robert J Schmitz	Dec 21, 2015
GSE76982	Histone H1 limits DNA methylation in Neurospora	Methylation profiling by high throughput sequencing	Neurospora crassa	7	TSV TXT SRA Run Selector	Robert J Schmitz	Apr 20, 2016
GSE81129	Dual chromatin recognition by the histone deacetylase complex HCHC is required for proper DNA methylation in Neurospora crassa	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Neurospora crassa	7	IGV TDF SRA Run Selector	Michael R Rountree	Jan 01, 2017
GSE134445	The histone H3G34R mutation disrupts the epigenome via catalytic inactivation of the ASH1 H3K36 methyltransferase [ATAC-seq]	Methylation profiling by high throughput sequencing	Neurospora crassa	5	BIGWIG IGV SRA Run Selector	Elizabeth Toomey Wiles	Oct 19, 2022