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137 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Neurospora crassa
GSE97157	RNA-seq analysis of wild type and upf1 knockout strains in the filamentous fungus Neurospora crassa.	Expression profiling by high throughput sequencing	Neurospora crassa	2	TXT SRA Run Selector	yin Zhang	Aug 02, 2017
GSE193075	H3K56 deacetylation and H2A.Z deposition are required for aberrant heterochromatin spreading	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Neurospora crassa	36	BEDGRAPH BW	Lu Zhang	Jan 25, 2022
GSE252700	H3T11 phosphorylation by CKII is required for heterochromatin formation in Neurospora	Methylation profiling by high throughput sequencing	Neurospora crassa	6	BEDGRAPH	Tian Yuan	Sep 18, 2024
GSE261900	Sterol biosynthesis is regulated by a sophisticated regulatory network involving multiple transcription factors in fungi	Expression profiling by high throughput sequencing	Neurospora crassa	42	TXT	pengju YU	Mar 24, 2024
GSE272185	A PWWP domain-containing protein Crf4-3 specifically modulates fungal azole susceptibility by regulating sterol C-14 demethylase ERG11	Expression profiling by high throughput sequencing	Neurospora crassa	12	TXT	pengju YU	Sep 15, 2024
GSE92848	A Fungal Transcription Factor Essential for Starch Degradation Regulates Primary Carbon and Nitrogen Metabolism and Amino Acid Biosynthesis	Expression profiling by high throughput sequencing	Neurospora crassa	21	TXT SRA Run Selector	Yi Xiong	Apr 09, 2017
GSE95350	Transcriptomic changes in response to different carbon sources in Neurospora crassa	Expression profiling by high throughput sequencing	Neurospora crassa	30	TXT	Yi Xiong	Apr 09, 2017
GSE128317	Evolutionarily ancient BAH-PHD protein mediates Polycomb silencing in Neurospora crassa	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Third-party reanalysis	Neurospora crassa	16	BIGWIG TXT SRA Run Selector	Elizabeth Toomey Wiles	Apr 15, 2020
GSE134445	The histone H3G34R mutation disrupts the epigenome via catalytic inactivation of the ASH1 H3K36 methyltransferase [ATAC-seq]	Methylation profiling by high throughput sequencing	Neurospora crassa	5	BIGWIG IGV SRA Run Selector	Elizabeth Toomey Wiles	Oct 19, 2022
GSE134449	The histone H3G34R mutation disrupts the epigenome via catalytic inactivation of the ASH1 H3K36 methyltransferase [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Neurospora crassa	12	BIGWIG TDF SRA Run Selector	Elizabeth Toomey Wiles	Oct 19, 2022
GSE134451	The histone H3G34R mutation disrupts the epigenome via catalytic inactivation of the ASH1 H3K36 methyltransferase [RNA-seq]	Expression profiling by high throughput sequencing	Neurospora crassa	3	TAB XLSX SRA Run Selector	Elizabeth Toomey Wiles	Oct 19, 2022
GSE134452	The histone H3G34R mutation disrupts the epigenome via catalytic inactivation of the ASH1 H3K36 methyltransferase	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Neurospora crassa	20	BIGWIG IGV TAB TDF XLSX	Elizabeth Toomey Wiles	Oct 19, 2022
GSE13977	Expression of lignin-degrading enzymes in soils using targeted microarrays	Expression profiling by array	Agaricus bisporus Botrytis cinerea Coriolopsis gallica Cryphonectria parasitica Dichomitus squalens Fusarium oxysporum Fusarium proliferatum Gelatoporia subvermispora Heterobasidion annosum Lentinula edodes Neurospora crassa Phanerodontia chrysosporium Phlebia radiata Pleurotus eryngii Pleurotus ostreatus Schizophyllum commune Trametes cinnabarina Trametes coccinea Trametes versicolor synthetic construct unidentified	68	TXT	Katrina M Waters	Jun 01, 2009
GSE216517	ChIP-seq H4 and AcH4 in WT and del.ncu09482	Genome binding/occupancy profiling by high throughput sequencing	Neurospora crassa	6	BEDGRAPH	Bin Wang	Oct 26, 2022
GSE32451	Neurospora crassa wild-type cells (WT, FGSC 2489) undergoing a time-course treatment with staurosporine	Expression profiling by array	Neurospora crassa	30	GPR TXT	Arnaldo Videira	Sep 30, 2011
GSE32871	The role of photoreceptors in the light modulated cellulase gene expression in Neurospora crassa	Expression profiling by array	Neurospora crassa	20	GPR	Doris Tisch	Oct 12, 2011
GSE34098	Deciphering regulatory mechanisms associated with hemicellulose degradation in Neurospora crassa	Expression profiling by array	Neurospora crassa	23	GPR TXT	Chaoguang Tian	Mar 26, 2012
GSE157186	RCO-3 and COL-26 form an external-to-internal module that regulates the dual-affinity glucose transport system in Neurospora crassa	Expression profiling by high throughput sequencing	Neurospora crassa	24	TXT SRA Run Selector	chaoguang Tian	Sep 01, 2020
GSE88985	The transcription factor PDR-1 is a multi-functional regulator and key component of pectin deconstruction and catabolism in Neurospora crassa	Expression profiling by high throughput sequencing	Neurospora crassa	20	CSV TXT SRA Run Selector	Nils Thieme	May 19, 2017
GSE168277	The ACF chromatin remodeling complex is essential for Polycomb repression	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Neurospora crassa	59	BW TXT SRA Run Selector	Hideki Tanizawa	Mar 08, 2022