GEO Browser - GEO

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136 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Neurospora crassa
GSE112636	Diversity of cytosine methylation across the fungi tree of life	Methylation profiling by high throughput sequencing Third-party reanalysis	Wolfiporia cocos Uncinocarpus reesii Tilletiopsis washingtonensis Syncephalis fuscata Sporobolomyces roseus Spinellus fusiger Saccharomyces cerevisiae Radiomyces spectabilis Pyricularia oryzae KJ201 Pseudogymnoascus destructans Postia placenta Podospora anserina Pleurotus ostreatus Plenodomus lingam Phycomyces blakesleeanus Phanerodontia chrysosporium Parasitella parasitica Neurospora crassa Mixia osmundae Microbotryum lychnidis-dioicae Metarhizium robertsii Lobosporangium transversale Laccaria bicolor Kirkomyces cordensis Heterobasidion irregulare Hesseltinella vesiculosa Fusarium fujikuroi Flammula alnicola Cryptococcus neoformans var. grubii Cordyceps militaris Coprinopsis cinerea Coemansia spiralis Coemansia reversa Clavispora lusitaniae Candidozyma auris Candida albicans Botrytis cinerea Aureobasidium pullulans Aspergillus flavus Agaricus bisporus	31	TSV TXT XLS SRA Run Selector	Robert J Schmitz	Feb 18, 2019
GSE13977	Expression of lignin-degrading enzymes in soils using targeted microarrays	Expression profiling by array	unidentified synthetic construct Trametes versicolor Trametes coccinea Trametes cinnabarina Schizophyllum commune Pleurotus ostreatus Pleurotus eryngii Phlebia radiata Phanerodontia chrysosporium Neurospora crassa Lentinula edodes Heterobasidion annosum Gelatoporia subvermispora Fusarium proliferatum Fusarium oxysporum Dichomitus squalens Cryphonectria parasitica Coriolopsis gallica Botrytis cinerea Agaricus bisporus	68	TXT	Katrina M Waters	Jun 01, 2009
GSE111986	A novel conserved transcription factor CLR-4 regulates cellulase genes expression through controlling the intracellular cAMP level in ascomycete fungi	Expression profiling by high throughput sequencing	Thermothelomyces thermophilus Neurospora crassa	6	XLSX SRA Run Selector	Jingen Li	Mar 18, 2021
GSE73117	Evaluation of DNA-binding preferences of non-metazoan C2H2 zinc finger proteins by PBM	Other	synthetic construct Toxoplasma gondii Schizosaccharomyces pombe Schizophyllum commune Rhizopus delemar Puccinia graminis Physcomitrium patens Neurospora crassa Histoplasma capsulatum Dictyostelium discoideum Batrachochytrium dendrobatidis Arabidopsis thaliana	86	TXT	Hamed S Najafabadi	Jul 10, 2017
GSE141676	Rapid and Inexpensive Preparation of Genome-Wide Nucleosome Footprints from Model and Non-Model Organisms	Genome binding/occupancy profiling by high throughput sequencing	Schizosaccharomyces pombe Saccharomyces cerevisiae Neurospora crassa	13	FASTA GTF SGR SRA Run Selector	Jeffrey N McKnight	Dec 10, 2019
GSE23003	Multi-Targeted Priming For Genome-Wide Gene Expression Assays	Expression profiling by array	Saccharomyces cerevisiae Neurospora crassa	14	GPR	Francesc Lopez	Jul 20, 2010
GSE50997	The evolutionary interplay between Puf RNA binding proteins and their RNA targets	Expression profiling by array	Saccharomyces cerevisiae Neurospora crassa OR74A Neurospora crassa	28	GPR	Greg Hogan	Mar 16, 2015
GSE135498	Sequencing short capped RNAs captures acute transcription initiation and identifies promoter and distal regulatory elements across eukaryotes from total RNA	Other	Oryza sativa Neurospora crassa Nematostella vectensis Mus musculus Homo sapiens Capsaspora owczarzaki	40	BIGWIG BW TXT SRA Run Selector	Christopher Benner	Sep 16, 2019
GSE26798	Mating-type specific gene expression in the filamentous ascomycete Neurospora tetrasperma	Expression profiling by array	Neurospora tetrasperma Neurospora crassa	36	GPR	Nicklas Samils	Jan 26, 2011
GSE37034	Rapid evolution in fungal reproductive genes as revealed by evolutionary analyses of expressed sequence tags in Neurospora	Expression profiling by array	Neurospora intermedia Neurospora crassa	4	GPR	Nicklas Samils	Apr 05, 2012
GSE46912	Transcriptional profiling of Neurospora crassa cells containing MAK2Q100G allele: Exposure to ATP-analog (1NM-PP1) vs control	Expression profiling by array	Neurospora crassa OR74A Neurospora crassa	7	GPR	Abby Leeder	Jun 01, 2013
GSE49679	Transcriptional profiling of Neurospora crassa conidia undergoing a time-course: Δpp-1 vs WT	Expression profiling by array	Neurospora crassa OR74A Neurospora crassa	35	GPR TXT	Abby Leeder	Aug 09, 2013
GSE50995	Gene expression profiling of Puf knockouts in N. crassa	Expression profiling by array	Neurospora crassa OR74A Neurospora crassa	19	GPR	Greg Hogan	Mar 16, 2015
GSE8932	Genome-wide characterization of light-inducible responses reveals a hierarchical light-sensing cascade in N. crassa	Expression profiling by array	Neurospora crassa	135	DAT	Chen-Hui Chen	Mar 09, 2009
GSE12690	Relics of repeat-induced point mutation direct heterochromatin formation in Neurospora crassa	Genome binding/occupancy profiling by genome tiling array Methylation profiling by genome tiling array	Neurospora crassa	13	GPR	Zachary A Lewis	Dec 01, 2008
GSE14909	Molecular characterization of a cryptochrome in Neurospora crassa	Expression profiling by array	Neurospora crassa	12	TXT	Chen-Hui Chen	Mar 31, 2010
GSE21175	Diverse pathways generate microRNA-like RNAs and Dicer-independent small interfering RNAs in fungi	Non-coding RNA profiling by high throughput sequencing	Neurospora crassa	1	GFF TXT SRA Run Selector	Craig Mello	Jul 01, 2010
GSE22658	Neurospora crassa early sexual development with MTP priming	Expression profiling by array	Neurospora crassa	3	GPR	Francesc Lopez	Jul 03, 2010
GSE22972	Neurospora crassa early sexual development with oligod(T) priming	Expression profiling by array	Neurospora crassa	3	GPR	Francesc Lopez	Jul 17, 2010
GSE26209	Sex-specific expression during asexual development of Neurospora crassa under constant light condition	Expression profiling by array	Neurospora crassa	26	GPR	Francesc Lopez	Jun 06, 2011