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16 series

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Accession	Title	Series type(s)	Organism(s)	Samples	GDS	Supplementary	Contact	Release date
Filter			Drosophila pseudoobscura			BED
GSE24449	Genome-wide comparative ChIP-seq data of CTCF and RNA-seq data in Drosophila white prepupa on Illumina Genome Analyzer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Drosophila pseudoobscura Drosophila simulans Drosophila yakuba	21		BED TXT WIG SRA Run Selector	Kevin P. White	Nov 08, 2012
GSE44612	Comparative Validation of the D. melanogaster Encyclopedia of DNA Elements Transcript Models	Expression profiling by high throughput sequencing	Drosophila ananassae Drosophila biarmipes Drosophila bipectinata Drosophila elegans Drosophila eugracilis Drosophila ficusphila Drosophila kikkawai Drosophila melanogaster Drosophila mojavensis Drosophila pseudoobscura Drosophila rhopaloa Drosophila simulans Drosophila takahashii Drosophila virilis Drosophila yakuba	93		BAM BED RPKM TXT	Brian Oliver	Feb 25, 2013
GSE66284	CAGE-Seq of gonads and carcasses from D. melanogaster and D. pseudoobscura	Expression profiling by high throughput sequencing	Drosophila melanogaster Drosophila pseudoobscura	8		BED SRA Run Selector	Brian Oliver	Feb 26, 2015
GSE89300	Drosophila pseudoobscura embryonic development RAMPAGE time series	Expression profiling by high throughput sequencing	Drosophila pseudoobscura	29		BED BW TXT SRA Run Selector	Philippe Batut	Dec 19, 2017
GSE213375	Mechanistic divergence of piRNA biogenesis in Drosophila [RNA-seq]	Expression profiling by high throughput sequencing	Drosophila bifasciata Drosophila eugracilis Drosophila pseudoobscura	4		BED	Rippei Hayashi	Sep 19, 2022
GSE213383	Mechanistic divergence of piRNA biogenesis in Drosophila	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Drosophila bifasciata Drosophila eugracilis Drosophila melanogaster Drosophila mojavensis Drosophila pseudoobscura	27		BED TXT	Rippei Hayashi	Sep 19, 2022
GSE23537	modENCODE_White Lab: genome-wide ChIP-chip and ChIP-Seq data	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Drosophila pseudoobscura Drosophila simulans Drosophila yakuba	247		BAR BED BEDGRAPH CEL GFF WIG SRA Run Selector	Kevin P. White	Aug 11, 2010
GSE25665	modENCODE_White Lab: genome-wide ChIP data of H3K27me3 from D.pse_E0-4h on Illumina Genome Analyzer.	Genome binding/occupancy profiling by high throughput sequencing	Drosophila pseudoobscura	2		BED BEDGRAPH	Kevin P. White	Feb 15, 2011
GSE25666	modENCODE_White Lab: genome-wide ChIP data of KW3-Psq-D2 from D.pse_E0-4h on Illumina Genome Analyzer.	Genome binding/occupancy profiling by high throughput sequencing	Drosophila pseudoobscura	2		BED BEDGRAPH	Kevin P. White	Feb 15, 2011
GSE25667	modENCODE_White Lab: genome-wide ChIP data of KW3-Trl-D2 from D.pse_E0-4h on Illumina Genome Analyzer.	Genome binding/occupancy profiling by high throughput sequencing	Drosophila pseudoobscura	2		BED BEDGRAPH	Kevin P. White	Feb 15, 2011
GSE25668	modENCODE_White Lab: genome-wide ChIP data of H3K27me3 from D.pse_WPP on Illumina Genome Analyzer.	Genome binding/occupancy profiling by high throughput sequencing	Drosophila pseudoobscura	2		BED BEDGRAPH	Kevin P. White	Feb 15, 2011
GSE35648	ChIP-seq study of BEAF binding in four Drosophila spcies	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Drosophila pseudoobscura Drosophila simulans Drosophila virilis	8		BED SRA Run Selector	Jingping Yang	Aug 03, 2012
GSE60428	Cooperativity, specificity and evolutionary stability of Polycomb targeting in Drosophila	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Drosophila pseudoobscura Drosophila simulans Drosophila virilis Drosophila yakuba	70		BED BEDGRAPH TXT SRA Run Selector	Bernd Schuettengruber	Oct 20, 2014
GSE63333	Genome-wide binding patterns of group B Sox proteins in four Drosophila species	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Drosophila pseudoobscura Drosophila simulans Drosophila yakuba	30		BED BEDGRAPH SRA Run Selector	Sarah Carl	Nov 18, 2014
GSE213379	Mechanistic divergence of piRNA biogenesis in Drosophila [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Drosophila bifasciata Drosophila pseudoobscura	6		BED	Rippei Hayashi	Sep 19, 2022
GSE213369	Mechanistic divergence of piRNA biogenesis in Drosophila [ncRNA-seq]	Non-coding RNA profiling by high throughput sequencing	Drosophila bifasciata Drosophila eugracilis Drosophila melanogaster Drosophila mojavensis Drosophila pseudoobscura	17		BED TXT	Rippei Hayashi	Sep 19, 2022