GEO Browser - GEO

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95 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Drosophila simulans
GSE28078	mRNA-Seq of whole flies from Drosophila	Expression profiling by high throughput sequencing	Drosophila ananassae Drosophila melanogaster Drosophila mojavensis Drosophila pseudoobscura Drosophila simulans Drosophila virilis Drosophila yakuba	32	BAM RPKM TXT SRA Run Selector	Brian Oliver	Mar 23, 2011
GSE31302	RNA-Seq of Gonads and Carcasses in D. simulans and D. pseudoobscura	Expression profiling by high throughput sequencing	Drosophila pseudoobscura Drosophila simulans	17	BAM SRA Run Selector	Brian Oliver	Aug 26, 2011
GSE44612	Comparative Validation of the D. melanogaster Encyclopedia of DNA Elements Transcript Models	Expression profiling by high throughput sequencing	Drosophila ananassae Drosophila biarmipes Drosophila bipectinata Drosophila elegans Drosophila eugracilis Drosophila ficusphila Drosophila kikkawai Drosophila melanogaster Drosophila mojavensis Drosophila pseudoobscura Drosophila rhopaloa Drosophila simulans Drosophila takahashii Drosophila virilis Drosophila yakuba	93	BAM BED RPKM TXT	Brian Oliver	Feb 25, 2013
GSE17453	Regulatory divergence in Drosophila melanogaster and D. simulans: a genome-wide analysis of allele-specific expression	Expression profiling by genome tiling array	Drosophila melanogaster Drosophila simulans Drosophila sp. (in: flies)	24	BAR CEL	Rob J Kulathinal	Aug 05, 2009
GSE23537	modENCODE_White Lab: genome-wide ChIP-chip and ChIP-Seq data	Genome binding/occupancy profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array	Drosophila melanogaster Drosophila pseudoobscura Drosophila simulans Drosophila yakuba	247	BAR BED BEDGRAPH CEL GFF WIG SRA Run Selector	Kevin P. White	Aug 11, 2010
GSE36920	Reshaping of global gene expression networks and sex-biased gene expression by integration of a nascent gene	Genome binding/occupancy profiling by genome tiling array Expression profiling by array Expression profiling by high throughput sequencing	Drosophila melanogaster Drosophila simulans Drosophila yakuba	32	BAR CEL TXT	Sidi Chen	May 01, 2012
GSE24449	Genome-wide comparative ChIP-seq data of CTCF and RNA-seq data in Drosophila white prepupa on Illumina Genome Analyzer	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Drosophila melanogaster Drosophila pseudoobscura Drosophila simulans Drosophila yakuba	21	BED TXT WIG SRA Run Selector	Kevin P. White	Nov 08, 2012
GSE25658	modENCODE_White Lab: genome-wide ChIP data of KW3-Trl-D2 from D.sim_E0-4h on Illumina Genome Analyzer.	Genome binding/occupancy profiling by high throughput sequencing	Drosophila simulans	2	BED BEDGRAPH	Kevin P. White	Feb 15, 2011
GSE25659	modENCODE_White Lab: genome-wide ChIP data of KW3-Kr-D2 from D.sim_E0-4h on Illumina Genome Analyzer.	Genome binding/occupancy profiling by high throughput sequencing	Drosophila simulans	2	BED BEDGRAPH	Kevin P. White	Feb 15, 2011
GSE25660	modENCODE_White Lab: genome-wide ChIP data of KW3-Pcl-D2 from D.sim_E0-4h on Illumina Genome Analyzer.	Genome binding/occupancy profiling by high throughput sequencing	Drosophila simulans	2	BED BEDGRAPH	Kevin P. White	Feb 15, 2011
GSE25662	modENCODE_White Lab: genome-wide ChIP data of KW3-Pcl-D2 from D.sim_WPP on Illumina Genome Analyzer.	Genome binding/occupancy profiling by high throughput sequencing	Drosophila simulans	2	BED BEDGRAPH	Kevin P. White	Feb 15, 2011
GSE25663	modENCODE_White Lab: genome-wide ChIP data of H3K27me3 from D.sim_WPP on Illumina Genome Analyzer.	Genome binding/occupancy profiling by high throughput sequencing	Drosophila simulans	2	BED BEDGRAPH	Kevin P. White	Feb 15, 2011
GSE25664	modENCODE_White Lab: genome-wide ChIP data of H3K27me3 from D.sim_E0-4h on Illumina Genome Analyzer.	Genome binding/occupancy profiling by high throughput sequencing	Drosophila simulans	2	BED BEDGRAPH	Kevin P. White	Feb 15, 2011
GSE35648	ChIP-seq study of BEAF binding in four Drosophila spcies	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Drosophila pseudoobscura Drosophila simulans Drosophila virilis	8	BED SRA Run Selector	Jingping Yang	Aug 03, 2012
GSE54068	RNA-seq: technical variability and sampling (male)	Expression profiling by high throughput sequencing	Drosophila simulans	6	BED CSV SRA Run Selector	Lauren McIntyre	Jan 15, 2014
GSE58768	Non-coding roX RNAs Prevent the Binding of the MSL-complex to Heterochromatic Regions	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Drosophila simulans	11	BED SRA Run Selector	Jan Larsson	Nov 07, 2014
GSE60428	Cooperativity, specificity and evolutionary stability of Polycomb targeting in Drosophila	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Drosophila pseudoobscura Drosophila simulans Drosophila virilis Drosophila yakuba	70	BED BEDGRAPH TXT SRA Run Selector	Bernd Schuettengruber	Oct 20, 2014
GSE63333	Genome-wide binding patterns of group B Sox proteins in four Drosophila species	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Drosophila pseudoobscura Drosophila simulans Drosophila yakuba	30	BED BEDGRAPH SRA Run Selector	Sarah Carl	Nov 18, 2014
GSE89302	Drosophila simulans embryonic development RAMPAGE time series	Expression profiling by high throughput sequencing	Drosophila simulans	22	BED BW TXT SRA Run Selector	Philippe Batut	Dec 19, 2017
GSE89335	Drosophila species embryonic development RAMPAGE time series	Expression profiling by high throughput sequencing	Drosophila ananassae Drosophila erecta Drosophila melanogaster Drosophila pseudoobscura Drosophila simulans	119	BW	Philippe Batut	Dec 19, 2017