GEO Browser - GEO

Series

Samples

Platforms

DataSets

56 series

Export

Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Drosophila yakuba
GSE39782	Tag-seq profiling in eye-antennal and wing imaginal discs of D. melanogaster, D. yakuba and D. virilis	Expression profiling by high throughput sequencing	Drosophila melanogaster Drosophila virilis Drosophila yakuba	6	TXT SRA Run Selector	Stein Aerts	Sep 21, 2012
GSE39784	Tag-seq in eye-antennal and wing imaginal discs of D.melanogaster, D.yakuba, and D.virilis; RNA-seq in wild-type and glass mutant D.melanogaster eye-antennal imaginal discs.	Expression profiling by high throughput sequencing	Drosophila melanogaster Drosophila virilis Drosophila yakuba	10	TXT	Stein Aerts	Sep 21, 2012
GSE59707	Evolutionary changes in cis regulation are associated with altered chromatin activity and gene expression levels in the Drosophila eye development (RNA-Seq)	Expression profiling by high throughput sequencing	Drosophila ananassae Drosophila melanogaster Drosophila mojavensis Drosophila pseudoobscura Drosophila simulans Drosophila virilis Drosophila willistoni Drosophila yakuba	27	TXT SRA Run Selector	Stein Aerts	May 02, 2020
GSE100837	Comparative transcriptomics in the Drosophila Auditory Organ	Expression profiling by high throughput sequencing	Drosophila melanogaster Drosophila persimilis Drosophila pseudoobscura Drosophila simulans Drosophila yakuba	5	TXT SRA Run Selector	Stein Aerts	Jul 05, 2020
GSE225887	Unistrand piRNA clusters are an evolutionarily conserved mechanism to suppress endogenous retroviruses across the Drosophila genus [RNA-Seq]	Expression profiling by high throughput sequencing	Drosophila ananassae Drosophila azteca Drosophila biarmipes Drosophila bifasciata Drosophila erecta Drosophila ficusphila Drosophila melanogaster Drosophila mojavensis Drosophila persimilis Drosophila pseudoobscura Drosophila simulans Drosophila subobscura Drosophila suzukii Drosophila takahashii Drosophila virilis Drosophila yakuba	35	BW	Susanne Bornelöv	Sep 26, 2023
GSE225888	Unistrand piRNA clusters are an evolutionarily conserved mechanism to suppress endogenous retroviruses across the Drosophila genus [small RNA-Seq]	Non-coding RNA profiling by high throughput sequencing	Drosophila ananassae Drosophila azteca Drosophila biarmipes Drosophila bifasciata Drosophila erecta Drosophila ficusphila Drosophila melanogaster Drosophila mojavensis Drosophila persimilis Drosophila pseudoobscura Drosophila simulans Drosophila subobscura Drosophila suzukii Drosophila takahashii Drosophila virilis Drosophila yakuba	65	BW	Susanne Bornelöv	Sep 26, 2023
GSE225889	Unistrand piRNA clusters are an evolutionarily conserved mechanism to suppress endogenous retroviruses across the Drosophila genus	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila ananassae Drosophila azteca Drosophila biarmipes Drosophila erecta Drosophila ficusphila Drosophila melanogaster Drosophila mojavensis Drosophila persimilis Drosophila pseudoobscura Drosophila simulans Drosophila subobscura Drosophila suzukii Drosophila takahashii Drosophila virilis Drosophila yakuba	118	BW NARROWPEAK	Susanne Bornelöv	Sep 26, 2023
GSE240910	Unistrand piRNA clusters are an evolutionarily conserved mechanism to suppress endogenous retroviruses across the Drosophila genus [ATAC-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Drosophila biarmipes Drosophila erecta Drosophila ficusphila Drosophila melanogaster Drosophila persimilis Drosophila pseudoobscura Drosophila simulans Drosophila suzukii Drosophila yakuba	18	BW NARROWPEAK	Susanne Bornelöv	Sep 26, 2023
GSE63333	Genome-wide binding patterns of group B Sox proteins in four Drosophila species	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Drosophila pseudoobscura Drosophila simulans Drosophila yakuba	30	BED BEDGRAPH SRA Run Selector	Sarah Carl	Nov 18, 2014
GSE36764	Expression profiling of Drosophila testes	Expression profiling by high throughput sequencing	Drosophila melanogaster Drosophila simulans Drosophila yakuba	8	TXT SRA Run Selector	Sidi Chen	May 01, 2012
GSE36920	Reshaping of global gene expression networks and sex-biased gene expression by integration of a nascent gene	Genome binding/occupancy profiling by genome tiling array Expression profiling by array Expression profiling by high throughput sequencing	Drosophila melanogaster Drosophila simulans Drosophila yakuba	32	BAR CEL TXT	Sidi Chen	May 01, 2012
GSE20369	Binding site turnover produces pervasive quantitative changes in TF binding between closely related Drosophila species	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Drosophila yakuba	20	GFF TXT	Michael Eisen	Feb 18, 2010
GSE48251	Quantitative genome-wide enhancer activity maps for five Drosophila species show functional enhancer conservation and turnover during cis-regulatory evolution	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Drosophila ananassae Drosophila melanogaster Drosophila pseudoobscura Drosophila willistoni Drosophila yakuba	18	TXT SRA Run Selector	Daniel Gerlach	Apr 28, 2014
GSE274048	RNA-seq samples from male sex organs in Drosophila	Expression profiling by high throughput sequencing	Drosophila ananassae Drosophila biarmipes Drosophila bipectinata Drosophila elegans Drosophila eugracilis Drosophila ficusphila Drosophila kikkawai Drosophila melanogaster Drosophila simulans Drosophila takahashii Drosophila yakuba	176	TXT	Ben Hopkins	Oct 15, 2024
GSE102439	The transcription factor Grainyhead primes epithelial enhancers for spatiotemporal activation by displacing nucleosomes [evolutionary study]	Genome binding/occupancy profiling by high throughput sequencing	Drosophila ananassae Drosophila erecta Drosophila melanogaster Drosophila mojavensis Drosophila persimilis Drosophila pseudoobscura Drosophila sechellia Drosophila simulans Drosophila virilis Drosophila willistoni Drosophila yakuba	24	BW SRA Run Selector	Jelle Jacobs	Jun 04, 2018
GSE102441	The transcription factor Grainyhead primes epithelial enhancers for spatiotemporal activation by displacing nucleosomes	Genome binding/occupancy profiling by high throughput sequencing	Drosophila ananassae Drosophila erecta Drosophila melanogaster Drosophila mojavensis Drosophila persimilis Drosophila pseudoobscura Drosophila sechellia Drosophila simulans Drosophila virilis Drosophila willistoni Drosophila yakuba Homo sapiens	175	BW	Jelle Jacobs	Jun 04, 2018
GSE124136	Differences in circadian rhythms in fly at different temperatures	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Expression profiling by array	Drosophila melanogaster Drosophila simulans Drosophila virilis Drosophila yakuba	104	CEL	Sebastian Kadener	Dec 02, 2019
GSE124142	Total RNA from different species fly heads	Expression profiling by high throughput sequencing	Drosophila simulans Drosophila virilis Drosophila yakuba	18	TXT SRA Run Selector	Sebastian Kadener	Dec 03, 2019
GSE62556	The evolution of genic piRNA cluster loci expression patterns	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Drosophila erecta Drosophila melanogaster Drosophila virilis Drosophila yakuba Mus musculus Oryctolagus cuniculus Rattus norvegicus	25	TXT SRA Run Selector	NELSON LAU	Nov 01, 2015
GSE86055	Evolution of A-to-I RNA Editing in Drosophila	Expression profiling by high throughput sequencing Other	Drosophila ananassae Drosophila melanogaster Drosophila pseudoobscura Drosophila simulans Drosophila virilis Drosophila yakuba	52	TXT SRA Run Selector	Jin Billy Li	Jan 04, 2017