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56 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Drosophila yakuba
GSE50819	modENCODE_White Lab: genome-wide ChIP-chip and ChIP-seq data [D. yakuba H3K27me3]	Genome binding/occupancy profiling by high throughput sequencing	Drosophila yakuba	3	BED WIG SRA Run Selector	Kevin P. White	Sep 13, 2013
GSE23537	modENCODE_White Lab: genome-wide ChIP-chip and ChIP-Seq data	Genome binding/occupancy profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array	Drosophila melanogaster Drosophila pseudoobscura Drosophila simulans Drosophila yakuba	247	BAR BED BEDGRAPH CEL GFF WIG SRA Run Selector	Kevin P. White	Aug 11, 2010
GSE25650	modENCODE_White Lab: genome-wide ChIP data of KW3-Trl-D2 from D.yak_WPP on Illumina Genome Analyzer.	Genome binding/occupancy profiling by high throughput sequencing	Drosophila yakuba	2	BED BEDGRAPH	Kevin P. White	Feb 15, 2011
GSE25646	modENCODE_White Lab: genome-wide ChIP data of KW3-Trl-D2 from D.yak_E0-4h on Illumina Genome Analyzer.	Genome binding/occupancy profiling by high throughput sequencing	Drosophila yakuba	2	BED BEDGRAPH	Kevin P. White	Feb 15, 2011
GSE25655	modENCODE_White Lab: genome-wide ChIP data of KW3-Psq-D2 from D.yak_E0-4h on Illumina Genome Analyzer.	Genome binding/occupancy profiling by high throughput sequencing	Drosophila yakuba	2	BED BEDGRAPH	Kevin P. White	Feb 15, 2011
GSE25657	modENCODE_White Lab: genome-wide ChIP data of KW3-Pcl-D2 from D.yak_E0-4h on Illumina Genome Analyzer.	Genome binding/occupancy profiling by high throughput sequencing	Drosophila yakuba	2	BED BEDGRAPH	Kevin P. White	Feb 15, 2011
GSE25654	modENCODE_White Lab: genome-wide ChIP data of KW3-Kr-D2 from D.yak_E0-4h on Illumina Genome Analyzer.	Genome binding/occupancy profiling by high throughput sequencing	Drosophila yakuba	2	BED BEDGRAPH	Kevin P. White	Feb 15, 2011
GSE28078	mRNA-Seq of whole flies from Drosophila	Expression profiling by high throughput sequencing	Drosophila ananassae Drosophila melanogaster Drosophila mojavensis Drosophila pseudoobscura Drosophila simulans Drosophila virilis Drosophila yakuba	32	BAM RPKM TXT SRA Run Selector	Brian Oliver	Mar 23, 2011
GSE225888	Unistrand piRNA clusters are an evolutionarily conserved mechanism to suppress endogenous retroviruses across the Drosophila genus [small RNA-Seq]	Non-coding RNA profiling by high throughput sequencing	Drosophila ananassae Drosophila azteca Drosophila biarmipes Drosophila bifasciata Drosophila erecta Drosophila ficusphila Drosophila melanogaster Drosophila mojavensis Drosophila persimilis Drosophila pseudoobscura Drosophila simulans Drosophila subobscura Drosophila suzukii Drosophila takahashii Drosophila virilis Drosophila yakuba	65	BW	Susanne Bornelöv	Sep 26, 2023
GSE225887	Unistrand piRNA clusters are an evolutionarily conserved mechanism to suppress endogenous retroviruses across the Drosophila genus [RNA-Seq]	Expression profiling by high throughput sequencing	Drosophila ananassae Drosophila azteca Drosophila biarmipes Drosophila bifasciata Drosophila erecta Drosophila ficusphila Drosophila melanogaster Drosophila mojavensis Drosophila persimilis Drosophila pseudoobscura Drosophila simulans Drosophila subobscura Drosophila suzukii Drosophila takahashii Drosophila virilis Drosophila yakuba	35	BW	Susanne Bornelöv	Sep 26, 2023
GSE240910	Unistrand piRNA clusters are an evolutionarily conserved mechanism to suppress endogenous retroviruses across the Drosophila genus [ATAC-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Drosophila biarmipes Drosophila erecta Drosophila ficusphila Drosophila melanogaster Drosophila persimilis Drosophila pseudoobscura Drosophila simulans Drosophila suzukii Drosophila yakuba	18	BW NARROWPEAK	Susanne Bornelöv	Sep 26, 2023
GSE225889	Unistrand piRNA clusters are an evolutionarily conserved mechanism to suppress endogenous retroviruses across the Drosophila genus	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila ananassae Drosophila azteca Drosophila biarmipes Drosophila erecta Drosophila ficusphila Drosophila melanogaster Drosophila mojavensis Drosophila persimilis Drosophila pseudoobscura Drosophila simulans Drosophila subobscura Drosophila suzukii Drosophila takahashii Drosophila virilis Drosophila yakuba	118	BW NARROWPEAK	Susanne Bornelöv	Sep 26, 2023
GSE124142	Total RNA from different species fly heads	Expression profiling by high throughput sequencing	Drosophila simulans Drosophila virilis Drosophila yakuba	18	TXT SRA Run Selector	Sebastian Kadener	Dec 03, 2019
GSE102439	The transcription factor Grainyhead primes epithelial enhancers for spatiotemporal activation by displacing nucleosomes [evolutionary study]	Genome binding/occupancy profiling by high throughput sequencing	Drosophila ananassae Drosophila erecta Drosophila melanogaster Drosophila mojavensis Drosophila persimilis Drosophila pseudoobscura Drosophila sechellia Drosophila simulans Drosophila virilis Drosophila willistoni Drosophila yakuba	24	BW SRA Run Selector	Jelle Jacobs	Jun 04, 2018
GSE102441	The transcription factor Grainyhead primes epithelial enhancers for spatiotemporal activation by displacing nucleosomes	Genome binding/occupancy profiling by high throughput sequencing	Drosophila ananassae Drosophila erecta Drosophila melanogaster Drosophila mojavensis Drosophila persimilis Drosophila pseudoobscura Drosophila sechellia Drosophila simulans Drosophila virilis Drosophila willistoni Drosophila yakuba Homo sapiens	175	BW	Jelle Jacobs	Jun 04, 2018
GSE62556	The evolution of genic piRNA cluster loci expression patterns	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Drosophila erecta Drosophila melanogaster Drosophila virilis Drosophila yakuba Mus musculus Oryctolagus cuniculus Rattus norvegicus	25	TXT SRA Run Selector	NELSON LAU	Nov 01, 2015
GSE39782	Tag-seq profiling in eye-antennal and wing imaginal discs of D. melanogaster, D. yakuba and D. virilis	Expression profiling by high throughput sequencing	Drosophila melanogaster Drosophila virilis Drosophila yakuba	6	TXT SRA Run Selector	Stein Aerts	Sep 21, 2012
GSE39784	Tag-seq in eye-antennal and wing imaginal discs of D.melanogaster, D.yakuba, and D.virilis; RNA-seq in wild-type and glass mutant D.melanogaster eye-antennal imaginal discs.	Expression profiling by high throughput sequencing	Drosophila melanogaster Drosophila virilis Drosophila yakuba	10	TXT	Stein Aerts	Sep 21, 2012
GSE56244	Small RNAs from four Drosophila melanogaster-subgroup species	Non-coding RNA profiling by high throughput sequencing	Drosophila erecta Drosophila sechellia Drosophila simulans Drosophila yakuba	4	TXT SRA Run Selector	Jaaved Mohammed	Jul 22, 2014
GSE98013	Small RNAs from 11 Drosophila species	Non-coding RNA profiling by high throughput sequencing	Drosophila ananassae Drosophila erecta Drosophila grimshawi Drosophila mojavensis Drosophila persimilis Drosophila pseudoobscura Drosophila sechellia Drosophila simulans Drosophila virilis Drosophila willistoni Drosophila yakuba	56	TXT SRA Run Selector	Jaaved Mohammed	Nov 20, 2017