92 series
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Accession Title Series type(s) Organism(s) Samples GDS Supplementary Contact Release date
Remove filtersFilter Remove filterDanio rerio Remove filterBED
(Epi)genetic regulation of zebrafish intestinal development
  • Link icon Danio rerio
24 Leonie M Kamminga Oct 24, 2018
3'GAmES: Systematic refinement of gene termini by mRNA 3' end sequencing
  • Link icon Danio rerio
1 Stefan Ludwig Ameres Mar 11, 2020
5hmC (48hpf WT dissected heart) 5hMe-Bead-Integrated Click-seq (5hMe-BIC-seq)
  • Link icon Danio rerio
4 Heng Pan Jan 15, 2019
A Cdx4-Sall4 regulatory module controls the transition from mesoderm formation to embryonic hematopoiesis
  • Link icon Danio rerio
7 Shaun Mahony Dec 02, 2013
A map of cis-regulatory elements and 3D genome structures in zebrafish
  • Link icon Danio rerio
204 Yu Luan Sep 04, 2020
A regulatory network of Sox and Six transcription factors initiate a cell fate transformation during hearing regeneration in adult zebrafish
  • Link icon Danio rerio
29 Erin Jimenez Jul 19, 2022
ATAC-seq profile of zebrafish periderm at 4-somite stage
  • Link icon Danio rerio
4 Robert Cornell Jan 13, 2020
ATACseq of haemogenic and aortic endothelium in zebrafish embryos 28-20 hours post fertilization
  • Link icon Danio rerio
16 Florian Bonkhofer Jun 06, 2019
Abundant DNA 6mA methylation during early embryogenesis of zebrafish
  • Link icon Danio rerio
13 Guan-Zheng Luo Oct 10, 2016
Active DNA demethylation at enhancers during the vertebrate phylotypic period
30 Ozren Bogdanovic Jan 29, 2016
Adar-mediated A-to-I editing is required for establishment of embryonic body axes in zebrafish
  • Link icon Danio rerio
32 Cecilia Lanny Winata Aug 02, 2022
Allelic reprogramming of the histone modification H3K4me3 in early mammalian development
57 Bingjie Zhang Sep 15, 2016
An evolutionarily conserved DNA-encoded logic shapes CpG island formation
17 Hannah Katherine Long Apr 18, 2016
Analysis of gene network branching during optic cup morphogenesis in zebrafish
  • Link icon Danio rerio
4 Lorena Buono May 06, 2021
Atac-seq of 2.5 hpf zebrafish embryos
  • Link icon Danio rerio
2 Michael Meier Dec 01, 2017
Base-resolution 5-hydroxymethylcytosine maps of sea urchin and lancelet embryos and adult tissues
31 Ksenia Skvortsova Nov 08, 2021
Base-resolution DNA hydroxymethylation maps of purple sea urchin (Strongylocentrotus purpuratus), european lancelet (Branchiostoma lanceolatum) and zebrafish (Danio rerio) using ACE-seq
15 Ksenia Skvortsova Nov 08, 2021
CUT&RUN profiling of Tfap2a binding genome-wide using zebrafish embryos at 24hpf
  • Link icon Danio rerio
2 Colin Kenny Dec 18, 2023
ChIP-seq analysis of Rad21 binding during genome activation
  • Link icon Danio rerio
14 Michael Meier Dec 01, 2017
Chromatin accessibility established by Pou5f3, Sox19b and Nanog primes genes for activity during zebrafish genome activation.
  • Link icon Danio rerio
26 Gunnar Schulze Jan 08, 2020