GEO Browser - GEO

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1144 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Danio rerio		SRA Run Selector
GSE14782	Mycobacterium marinum chronic infection of adult zebrafish	Expression profiling by array Expression profiling by high throughput sequencing	Danio rerio	8	XML SRA Run Selector	Anna Magdalena Zakrzewska	Jun 30, 2009
GSE20600	Genome-wide identification of putative cis-regulatory elements through epigenetic profiling in zebrafish	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	6	BED WIG SRA Run Selector	Lihua Julie Zhu	Feb 25, 2011
GSE21024	Traf6 function in the innate immune response of zebrafish embryos	Expression profiling by high throughput sequencing	Danio rerio	4	SAM TXT SRA Run Selector	Oliver Stockhammer	Aug 01, 2010
GSE21152	Conservation and divergence of methylation patterning in plants and animals	Methylation profiling by high throughput sequencing	Apis mellifera Arabidopsis thaliana Chlamydomonas reinhardtii Ciona intestinalis Danio rerio Mus musculus Oryza sativa Populus trichocarpa	14	TXT SRA Run Selector	matteo Pellegrini	Apr 09, 2010
GSE21503	A novel miRNA processing pathway independent of Dicer requires Argonaute2 catalytic activity	Non-coding RNA profiling by high throughput sequencing	Danio rerio	5	TXT SRA Run Selector	Antonio J. Giraldez	Jul 01, 2010
GSE22068	Expanding the MicroRNA Targeting Code: A Novel Type of Site with Centered Pairing	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Danio rerio Homo sapiens	11	TXT SRA Run Selector	Jin-Wu Nam	Jun 25, 2010
GSE22472	Deep sequencing of the innate immune transcriptomic response of zebrafish embryos to Salmonella infection	Expression profiling by high throughput sequencing	Danio rerio	4	TXT SRA Run Selector	Oliver Stockhammer	Oct 26, 2010
GSE22830	High-throughput sequencing of mRNA from oocyte, 1 cell, 16/32 cells, 128/256 cells, 3.5hpf and 5.3hpf zebrafish embryos (Wild type; AB line)	Expression profiling by high throughput sequencing	Danio rerio	6	BEDGRAPH GFF SRA Run Selector	Justin Jeyakani Joseph Gnanakkan	Mar 31, 2011
GSE23666	Highly Aneuploid Zebrafish Malignant Peripheral Nerve Sheath Tumors have Genetic Alterations Similar to Human Cancers	Genome variation profiling by array Genome variation profiling by high throughput sequencing	Danio rerio	48	TXT SRA Run Selector	Sebastian Hoersch	Sep 08, 2010
GSE23762	Off-Target Analysis of Zinc Finger Nucleases	Other Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	21	TXT SRA Run Selector	Scot Wolfe	Aug 25, 2010
GSE25023	[E-MTAB-308] Zebrafish gene 3 prime end pull down for genome annotation	Expression profiling by high throughput sequencing	Danio rerio	7	SRA Run Selector	European Bioinformatics Institute	Dec 04, 2010
GSE27722	Transcriptome-wide analysis of small RNA expression in early zebrafish development	Non-coding RNA profiling by high throughput sequencing	Danio rerio	5	FA TXT SRA Run Selector	Chunyao Wei	Mar 01, 2012
GSE29418	Tdrd1 acts as a molecular scaffold for Piwi proteins and piRNA targets in zebrafish.	Non-coding RNA profiling by high throughput sequencing	Danio rerio	7	SRA Run Selector	Eugene Berezikov	Aug 31, 2011
GSE30603	[E-MTAB-434] Transcription profiling by high throughput sequencing of zebra fish tissues and developmental stages	Expression profiling by high throughput sequencing	Danio rerio	7	SRA Run Selector	European Bioinformatics Institute	Jul 14, 2011
GSE30608	[E-MTAB-460] Sanger_zebrafish_sequencing	Expression profiling by high throughput sequencing	Danio rerio	12	SRA Run Selector	European Bioinformatics Institute	Jul 14, 2011
GSE32483	Dynamics of enhancer chromatin signatures mark the transition from pluripotency to cell specification during embryogenesis	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	24	BED WIG SRA Run Selector	Ozren Bogdanovic	May 08, 2012
GSE32880	Conserved Function of lincRNAs in Vertebrate Embryonic Development Despite Rapid Sequence Evolution	Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	16	BAM BED BW SRA Run Selector	Igor Ulitsky	Dec 22, 2011
GSE32898	Comprehensive identification of long non-coding RNAs expressed during zebrafish embryogenesis [RNA_seq]	Non-coding RNA profiling by high throughput sequencing	Danio rerio	17	SRA Run Selector	Eivind Valen	Nov 17, 2011
GSE32899	Comprehensive identification of long non-coding RNAs expressed during zebrafish embryogenesis [ChIP_Seq]	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	3	SRA Run Selector	Eivind Valen	Nov 17, 2011
GSE33582	Hen1 analysis in zebrafish	Non-coding RNA profiling by high throughput sequencing	Danio rerio	4	SRA Run Selector	Eugene Berezikov	Nov 09, 2011