GEO Browser - GEO

Series

Samples

Platforms

DataSets

2528 series

Export

Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Danio rerio
GSE95032	‘Placeholder’ nucleosomes underlie germline-to-embryo DNA methylation reprogramming [RRBS]	Methylation profiling by high throughput sequencing	Danio rerio	25	BW SRA Run Selector	Patrick Murphy	Dec 12, 2017
GSE95031	‘Placeholder’ nucleosomes underlie germline-to-embryo DNA methylation reprogramming [RNA-Seq]	Expression profiling by high throughput sequencing	Danio rerio	12	XLSX SRA Run Selector	Patrick Murphy	Dec 12, 2017
GSE95030	‘Placeholder’ nucleosomes underlie germline-to-embryo DNA methylation reprogramming [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	49	BED BW SRA Run Selector	Patrick Murphy	Dec 12, 2017
GSE95033	‘Placeholder’ nucleosomes underlie germline-to-embryo DNA methylation reprogramming	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Danio rerio	86		Patrick Murphy	Dec 12, 2017
GSE167187	δ-cell conversion to insulin+ bihormonal cells in zebrafish	Expression profiling by high throughput sequencing	Danio rerio	19	TXT SRA Run Selector	Claudio Carril Pardo	Jan 28, 2022
GSE186926	α6β2* nAChR Antagonist TxIB Changed Gene Expression in Zebrafish (Danio rerio) brain Induced by Alcohol Withdrawal	Expression profiling by high throughput sequencing	Danio rerio	9	TXT SRA Run Selector	Kailin Mao	Nov 03, 2021
GSE218107	Quiescent Müller glia heterogeneity influences regenerative response following photoreceptor ablation in the zebrafish retina	Expression profiling by high throughput sequencing	Danio rerio	3	MTX TSV	Shuguang Yu	Aug 21, 2023
GSE138181	runx1 controls zebrafish heart regeneration by promoting scar deposition as well as inhibiting myocardial proliferation and survival	Expression profiling by high throughput sequencing	Danio rerio	3	H5 SRA Run Selector	Bertie Gottgens	Apr 16, 2020
GSE29307	zebrafish liver tumor signatures	Expression profiling by array	Danio rerio	11	TXT	Herman Pieter Spaink	Jul 07, 2011
GSE109581	tp53 deficiency causes a wide tumor spectrum and elevates embryonal rhabdomyosarcoma metastasis in zebrafish	Expression profiling by high throughput sequencing	Danio rerio	15	TXT SRA Run Selector	Sowmya Iyer	Sep 05, 2018
GSE268283	tp53 R217H and R242H Mutant Zebrafish Display Dysfunctional p53 Hallmarks and Recapitulate LFS Phenotypes [WGBS]	Methylation profiling by high throughput sequencing	Danio rerio	12	BED TXT	Kim Kobar	May 29, 2024
GSE267760	tp53 R217H and R242H Mutant Zebrafish Display Dysfunctional p53 Hallmarks and Recapitulate LFS Phenotypes [RNA-seq]	Expression profiling by high throughput sequencing	Danio rerio	24	TXT	Kim Kobar	May 22, 2024
GSE134187	the role of SMN complex in tissue regeneration	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Danio rerio	48	TXT SRA Run Selector	zelin chen	Jul 01, 2022
GSE217998	the anti lipid accumulation and anti liver cancer formation effect of CACF in CD36 overexpression transgenic zebrafish	Expression profiling by high throughput sequencing	Danio rerio	7	TAB XLSX	Chiou Hwa Yuh	Jan 31, 2023
GSE115233	sox32 Alleles Generated from Four-guide Cas9 RNP Targeting in G0 Zebrafish Embryos	Other	Danio rerio	6	FASTA SRA Run Selector	Roland S Wu	Jul 01, 2018
GSE152189	small non-coding RNA expression profile in F1 progeny from irradiated adults zebrafish	Non-coding RNA profiling by high throughput sequencing	Danio rerio	6	CSV SRA Run Selector	Leonardo Martin Martin	Feb 09, 2021
GSE34510	slc2a10/glut10 and TBFBR1	Expression profiling by array	Danio rerio	6	GPR	Seth Daniel Crosby	Dec 17, 2011
GSE228737	single-cell RNA sequencing analysis of metaphocytes and epidermal cells	Expression profiling by high throughput sequencing	Danio rerio	2	MTX TSV	Zilong WEN	Apr 08, 2023
GSE197270	shox2 is required for inner ear development	Expression profiling by high throughput sequencing	Danio rerio	3	MTX TSV	Kelvin Y. Kwan	Feb 22, 2023
GSE151238	setd2 knockout zebrafish is survivable and fertile: differential and developmental-stress-related requirements for Setd2 and histone H3K36 trimethylation in different vertebrate animals	Expression profiling by high throughput sequencing	Danio rerio	3	TXT SRA Run Selector	Dianjia Liu	May 27, 2020