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213 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Salmo salar
GSE195869	Comparative analysis of genome-scale, base-resolution DNA methylation profiles across 580 animal species	Methylation profiling by high throughput sequencing	Abronia anzuetoi Acanthosaura Acanthurus triostegus Accipiter gentilis Accipiter nisus Acinonyx Acomys Acryllium vulturinum Agapornis Agapornis canus Agapornis lilianae Agapornis personatus Agapornis taranta Ailurus fulgens Alectis ciliaris Alitta succinea Amandava subflava Amazona Amazona agilis Amblyglyphidodon leucogaster Ambystoma Ambystoma andersoni Ambystoma mexicanum Ammodytes dubius Ammodytes hexapterus Ammotragus Anas platyrhynchos Anoplopoma fimbria Antidorcas Antilope Aonyx cinereus Aotidae Aplonis panayensis Apodemus flavicollis Apodemus sylvaticus Apostichopus parvimensis Aptenodytes patagonicus Aquila heliaca Ara Ara ararauna Ardea Ariopsis felis Ascidiella aspersa Asio otus Astrochelys radiata Astrochelys yniphora Athene noctua Atherinomorus vaigiensis Axis axis Balearica pavonina Bathymaster signatus Batoidea Bison bonasus Boa constrictor Bodianus diana Boltenia echinata Boltenia ovifera Bos Boselaphus tragocamelus Bothriechis schlegelii Botryllus schlosseri Brachylophus Branchiostoma floridae Bubalus Bubo bubo Buteo Buteo buteo Buteo lagopus Bycanistes bucinator Cacatua alba Caiman yacare Callithrix jacchus Callocephalon fimbriatum Callorhinchus milii Caloenas nicobarica Calyptocephallela gayi Camelus dromedarius Camelus ferus Canis aureus Canis lupus Canis lupus familiaris Canis lupus lycaon Cantherhines pardalis Capra Capra aegagrus Capreolus capreolus Capricornis Capromyidae Capromys pilorides Carcharias taurus Cariamidae Carollia perspicillata Castoridae Casuarius casuarius Caviidae Cebinae Centropomus robalito Centropristis striata Centropyge heraldi Cephalopholis miniata Cercopithecus Cervidae Cervus elaphus Cervus nippon Chaetodon lineolatus Chaetodon lunula Chamaeleo calyptratus Chamaeleonidae Charadriidae Chauna torquata Cheilodipterus quinquelineatus Cheilopogon pinnatibarbatus californicus Chelydra serpentina Chiroxiphia pareola Chloris chloris Chloropsis Choerodon fasciatus Chromis punctipinnis Chrysopelea Ciconia ciconia Ciconiidae Ciona intestinalis Circus aeruginosus Circus cyaneus Cirrhilabrus lineatus Cirrhilabrus roseafascia Clavelina picta Clupea harengus Coccothraustes Coliiformes Colobus guereza Colobus polykomos Columba livia Columbidae Connochaetes Copsychus malabaricus Coracias cyanogaster Coracias garrulus Coris caudimacula Coris gaimard Cornufer guentheri Coronella austriaca Correlophus ciliatus Corucia zebrata Corvus Corvus corax Corvus corone Corvus frugilegus Coryphaenoides acrolepis Coturnix coturnix Coturnix delegorguei Cricetinae Cricetomyinae Cricetus Crocodylia Crotalus Cryptacanthodes maculatus Ctenochaetus striatus Cucumaria frondosa Cuora mccordi Cuora mouhotii Cyanocompsa brissonii Cyanoliseus patagonus Cyclopsitta diophthalma Cyclopterus lumpus Cyclura Cyclura cornuta Cygnus cygnus Cygnus melancoryphus Cynictis Cynomys Cynoscion regalis Cyprinus carpio Dama dama Danio rerio Dascyllus aruanus Dasypodidae Dendrocygna viduata Dinemellia Diodon hystrix Dolichotis Dolichotis patagonum Doryteuthis pealeii Dracaena guianensis Dromaius novaehollandiae Ducula bicolor Duttaphrynus melanostictus Echinarachnius parma Ecsenius Ecteinascidia turbinata Elephas maximus indicus Eliomys quercinus Elops affinis Embiotoca jacksoni Emydidae Equus Equus asinus asinus Equus zebra Erethizon Erinaceidae Erpeton Erythrura Esox lucius Eudyptes chrysocome Eunectes Euplectes Euplectes orix Eurypygidae Falco cherrug Falco peregrinus Falco tinnunculus Felis catus Felis silvestris Fistularia commersonii Folivora Fromia Fromia indica Furcifer pardalis Gadus chalcogrammus Gadus morhua Galeocerdo cuvier Gallicolumba Gallus Gallus gallus Garrulus glandarius Gekkonidae Geochelone Geoemyda spengleri Geopelia placida Geronticus eremita Giraffa giraffa Glis glis Glyptocephalus cynoglossus Glyptocephalus zachirus Graptemys Grus japonensis Grus paradisea Gymnothorax moringa Gypaetus Haemulon flavolineatum Haliaeetus albicilla Haliaeetus leucocephalus Halichoeres trimaculatus Halocynthia pyriformis Heleophrynidae Heloderma Hemilepidotus jordani Hemisphaeriodon Hemitragus Hemitripterus americanus Heterocephalus Hippoglossina oblonga Hippoglossoides elassodon Hippoglossoides platessoides Hippotragus Hippotragus equinus Histrio histrio Holothuria Holothuria atra Holothuria cinerascens Homarus americanus Hoplobatrachus tigerinus Hydrochoerus hydrochaeris Hypanus americanus Hypselecara coryphaenoides Hystricidae Iguanidae Illex illecebrosus Incilius alvarius Irena puella Jacanidae Jaculus Kobus Kobus leche Labroides bicolor Laemanctus Lagostomus maximus Lama glama Lampropeltis Lamprotornis chalcurus Leiocephalus Lemur Leontocebus fuscicollis Leontopithecus Leontopithecus chrysomelas Lepas anatifera Lepidopsetta polyxystra Leptailurus Leptoclinus maculatus Leptoptilos crumeniferus Lepus europaeus Lepus timidus Lethenteron camtschaticum Lethrinus atkinsoni Leucoraja erinacea Leucoraja ocellata Lissemys punctata Loligo vulgaris Lophius piscatorius Loriculus galgulus Loweina rara Loweina terminata Lumpenus lampretaeformis Lutjanus mahogoni Lutjanus quinquelineatus Lutra lutra Lynx lynx Lyrurus tetrix Lytechinus variegatus Macaca Macaca silenus Macaca sylvanus Macropodidae Macropus Macroscelidea Macroscelides proboscideus Magallana gigas Malacochersus Marmota Martes foina Meles meles Melopsittacus Merops apiaster Merops bullockoides Milvus milvus Mimus polyglottos Molgula citrina Monacanthidae Morone saxatilis Mullus surmuletus Mungos mungo Muntiacus Mus musculus Musophaga Musophagidae Mustela Mustela putorius Mustelidae Mustelus canis Mya arenaria Myocastor coypus Myoxocephalus octodecemspinosus Myzopsetta ferruginea Naja Nanger dama Nardoa novaecaledoniae Nasua Natrix tessellata Nectariniidae Negaprion brevirostris Neoniphon sammara Neurergus Notamacropus parma Notamacropus rufogriseus Nothobranchius furzeri Nyctereutes Nymphicus hollandicus Octopus vulgaris Onuxodon fowleri Ophioderma panamensis Ophiopteris papillosa Ophiothrix spiculata Oplurus Oryctolagus cuniculus Osteoglossum bicirrhosum Ostorhinchus aureus Ostorhinchus moluccensis Ostorhinchus rueppellii Ostrea edulis Otaria Ovis aries Ovis orientalis Oxycercichthys veliferus Oxycheilinus digramma Oxylebius pictus Pachyuromys Padda oryzivora Panthera leo Panthera onca Panthera pardus Panthera tigris Papio Papio hamadryas Paracanthurus hepatus Paracirrhites forsteri Paralichthys dentatus Parapercis xanthozona Paroedura picta Parupeneus spilurus Parus major Passer domesticus Patiria miniata Pelecanus Pelecanus crispus Penaeus Perdix perdix Petauridae Petaurus breviceps Phalacrocorax carbo Phascolarctos cinereus Phasianus colchicus Philomachus Phloeomys Phocidae Phodopus campbelli Phoenicopteriformes Photoblepharon palpebratum Phyllopteryx taeniolatus Picus viridis Pisaster brevispinus Pisaster giganteus Pithecia pithecia Pitta moluccensis Platax teira Plegadis falcinellus Pleoticus muelleri Pleurogrammus monopterygius Ploceus cucullatus Podothecus accipenserinus Pogona barbata Pollachius virens Polychrus marmoratus Polypedates otilophus Pomacentrus coelestis Pomatomus saltatrix Pongo Potamochoerus porcus Prionotus carolinus Pristigenys alta Probosciger aterrimus Procyon lotor Psammomys obesus Psarisomus dalhousiae Pseudanthias Pseudanthias ventralis Pseudobalistes fuscus Pseudomonacanthus peroni Psittacus Pterocaesio marri Pteropus Ptilinopus Ptilinopus pulchellus Puma concolor Pycnonotus barbatus Python molurus Python regius Pythonidae Pytilia melba Rangifer tarandus Rattus norvegicus Rattus rattus Recurvirostra avosetta Rhabdamia gracilis Rhacophorus reinwardtii Rhea americana Rhinecanthus aculeatus Rhinocerotidae Rhinogobiops nicholsii Rhinoptera bonasus Rhyticeros narcondami Riftia pachyptila Rollulus Rupicapra rupicapra Saccoglossus kowalevskii Saguinus Saguinus imperator Saguinus mystax Saguinus oedipus Saimiriinae Salmo salar Salmo trutta Salvelinus alpinus Salvelinus umbla Sarcophilus Sauromalus Scandentia Scincidae Sciurus vulgaris Scolopsis bilineata Scophthalmus aquosus Scopus umbretta Scyliorhinus retifer Sebastes atrovirens Sebastes borealis Sebastes caurinus Sebastes chrysomelas Sebastes constellatus Sebastes hopkinsi Sebastes miniatus Sebastes mystinus Sebastes norvegicus Sebastes ovalis Sebastes paucispinis Sebastes semicinctus Sebastolobus alascanus Semicossyphus pulcher Serinus Shinisaurus crocodilurus Spatula querquedula Spermophilus Spheniscus humboldti Sphoeroides maculatus Spinus spinus Squalus acanthias Stenotomus chrysops Stichopus chloronotus Strigiformes Strix aluco Strix uralensis Strongylocentrotus droebachiensis Strongylocentrotus purpuratus Struthio camelus Sturnus vulgaris Styela montereyensis Sufflamen chrysopterum Suricata Sus scrofa Sus scrofa domesticus Sylvia atricapilla Tamias Tamiops Tapirus Taurotragus Tayassuidae Terrapene Testudinidae Testudo hermanni Testudo kleinmanni Tetrao urogallus Tetrastes bonasia Theloderma Theropithecus gelada Thunnus albacares Thyonella gemmata Tiliqua rugosa Tiliqua scincoides Tinca tinca Tockus alboterminatus Tockus deckeni Tockus flavirostris Tockus nasutus Trachemys Trachemys scripta elegans Trachemys scripta scripta Trachyphonus erythrocephalus Tragelaphus angasii Tragelaphus spekii Tragulus javanicus Triglops scepticus Tringa totanus Trioceros jacksonii Tupaia Upupa epops Uraeginthus bengalus Uromastyx Uromastyx ocellata Urophycis tenuis Ursus Ursus arctos Vanellus armatus Varanus Varanus exanthematicus Varanus gouldii Varecia Vermilingua Vicugna Vicugna pacos Vidua paradisaea Vipera ammodytes Vipera berus Vulpes vulpes Xenagama wilmsi Xiphias gladius Yangochiroptera Yinpterochiroptera Zamenis longissimus Zaprora silenus Zenopsis conchifer Zoarces americanus Zosteropidae	3023	BED SRA Run Selector	Christoph Bock	Jun 18, 2022
GSE157085	Diverse CGG binding proteins across eukaryotes produced by independent domestications of hAT transposons	Other	Acanthochromis polyacanthus Acipenser ruthenus Acyrthosiphon pisum Aedes aegypti Amphiprion ocellaris Amphiprion percula Anabarilius grahami Anabas testudineus Austrofundulus limnaeus Chrysemys picta Crocodylus porosus Culex quinquefasciatus Cyprinus carpio Erpetoichthys calabaricus Fundulus heteroclitus Gallus gallus Hippocampus comes Hofstenia miamia Homo sapiens Hucho hucho Kryptolebias marmoratus Labeo rohita Latimeria chalumnae Locusta migratoria Mola mola Nematostella vectensis Paramormyrops kingsleyae Petromyzon marinus Rhipicephalus appendiculatus Rhizophagus irregularis Rhodnius prolixus Salarias fasciatus Salmo salar Sparus aurata Sphaeramia orbicularis synthetic construct	258	TXT	Isaac Yellan	Feb 09, 2021
GSE3857	Atlantic Salmon Amoebic Gill Disease Study	Expression profiling by array	Coregonus clupeaformis Oncorhynchus mykiss Oncorhynchus tshawytscha Osmerus mordax Salmo salar	12		Ben F Koop	Dec 20, 2005
GSE6416	Toxicogenomic responses in rainbow trout hepatocytes exposed to model chemicals and a synthetic mixture	Expression profiling by array	Coregonus clupeaformis Oncorhynchus mykiss Oncorhynchus tshawytscha Osmerus mordax Salmo salar	40	TXT	Ben F Koop	Dec 05, 2006
GSE8309	Differences found in expression of cell surface & ECM components during development of the rainbow trout ovary & testis.	Expression profiling by array	Coregonus clupeaformis Oncorhynchus mykiss Oncorhynchus tshawytscha Osmerus mordax Salmo salar	24	TXT	Ben F Koop	Jun 29, 2007
GSE8826	High gene expression of inflammatory markers and IL-17A in Atlantic salmon vaccinated with oil-adjuvanted vaccines	Expression profiling by array	Coregonus clupeaformis Oncorhynchus mykiss Oncorhynchus tshawytscha Osmerus mordax Salmo salar	18	TXT	Ben F Koop	Aug 21, 2007
GSE9595	Global gene expresssion profiling the gills of amoebic gill disease (AGD) affected Atlantic salmon (Salmo salar)	Expression profiling by array	Coregonus clupeaformis Oncorhynchus mykiss Oncorhynchus tshawytscha Osmerus mordax Salmo salar	20	TXT	Ben F Koop	Nov 15, 2007
GSE11378	eQTL mapping in Lake Whitefish Species Pairs.	Expression profiling by array	Coregonus clupeaformis Salmo salar	154	TXT	Nicolas Derome	Sep 01, 2008
GSE12068	Brain eQTL analysis of lake whitefish species-pairs (Coregonus sp.)	Expression profiling by array	Coregonus clupeaformis Oncorhynchus mykiss Oncorhynchus tshawytscha Osmerus mordax Salmo salar	55	TXT	Andrew R Whiteley	Sep 01, 2008
GSE13570	Transcriptome profiling of embryonic development rate in rainbow trout advance backcross introgression lines	Expression profiling by array	Coregonus clupeaformis Oncorhynchus mykiss Oncorhynchus tshawytscha Osmerus mordax Salmo salar	24	TXT	Peng Xu	Nov 12, 2009
GSE13846	Domestication and growth hormone transgenesis cause similar changes in gene expression profiles in coho salmon	Expression profiling by array	Coregonus clupeaformis Oncorhynchus kisutch Oncorhynchus mykiss Oncorhynchus tshawytscha Osmerus mordax Salmo salar	29	TXT	Dionne Sakhrani	Mar 09, 2009
GSE16889	Domestication causes large-scale effects on gene expression in rainbow trout: Analysis of the brain transcriptome	Expression profiling by array	Coregonus clupeaformis Oncorhynchus mykiss Oncorhynchus tshawytscha Osmerus mordax Salmo salar	18	TXT	Wendy Tymchuk	Jul 03, 2009
GSE16897	Domestication causes large-scale effects on gene expression in rainbow trout: Analysis of the liver transcriptome	Expression profiling by array	Coregonus clupeaformis Oncorhynchus mykiss Oncorhynchus tshawytscha Osmerus mordax Salmo salar	14	TXT	Wendy Tymchuk	Jul 03, 2009
GSE16901	Domestication causes large-scale effects on gene expression in rainbow trout: Analysis of the muscle transcriptome	Expression profiling by array	Coregonus clupeaformis Oncorhynchus mykiss Oncorhynchus tshawytscha Osmerus mordax Salmo salar	12	TXT	Wendy Tymchuk	Jul 03, 2009
GSE16903	Domestication causes large-scale effects on gene expression in rainbow trout	Expression profiling by array	Coregonus clupeaformis Oncorhynchus mykiss Oncorhynchus tshawytscha Osmerus mordax Salmo salar	44	TXT	Wendy Tymchuk	Jul 03, 2009
GSE18792	The heat shock response of killifish (Fundulus heteroclitus): candidate gene and heterologous microarray approaches.	Expression profiling by array	Coregonus clupeaformis Fundulus heteroclitus Oncorhynchus mykiss Oncorhynchus tshawytscha Osmerus mordax Salmo salar	16	MEV	Wendy Tymchuk	Oct 30, 2009
GSE19111	Conservation genomics of Atlantic salmon (Year One)	Expression profiling by array	Coregonus clupeaformis Oncorhynchus mykiss Oncorhynchus tshawytscha Osmerus mordax Salmo salar	20	MEV	Wendy Tymchuk	Nov 25, 2009
GSE19119	Conservation genomics of Atlantic salmon (Year Two)	Expression profiling by array	Coregonus clupeaformis Oncorhynchus mykiss Oncorhynchus tshawytscha Osmerus mordax Salmo salar	34	MEV	Wendy Tymchuk	Nov 25, 2009
GSE19170	Conservation genomics of Atlantic salmon	Expression profiling by array	Coregonus clupeaformis Oncorhynchus mykiss Oncorhynchus tshawytscha Osmerus mordax Salmo salar	54	MEV	Wendy Tymchuk	Nov 25, 2009
GSE19478	Normal and shortened photoperiods in liver, ovary, and pituitarty	Expression profiling by array	Coregonus clupeaformis Oncorhynchus mykiss Oncorhynchus tshawytscha Osmerus mordax Salmo salar	183	TXT	Sharon E. Hook	Dec 15, 2009