GEO Browser - GEO

Series

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29 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Macaca mulatta		BED
GSE115065	Epigenetic maintenance of topological domains in the rearranged gibbon genome	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Macaca mulatta Nomascus leucogenys	6	BED BEDGRAPH	Lucia Carbone	May 30, 2018
GSE34426	Transcriptome study in rhesus monkey	Expression profiling by high throughput sequencing	Macaca mulatta	5	BAM BED SRA Run Selector	Jia-Yu Chen	Oct 10, 2012
GSE42413	The Evolution of Lineage-Specific Regulatory Activities in the Human Embryonic Limb	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus	56	BAM BED BW SRA Run Selector	Justin Cotney	Jul 02, 2013
GSE129034	Comparison of chromatin accessibility between human and non-human primates	Genome binding/occupancy profiling by high throughput sequencing	Gorilla gorilla Homo sapiens Macaca mulatta Pan troglodytes Pongo pygmaeus	15	BED SRA Run Selector	Gregory Crawford	Oct 11, 2019
GSE30198	Digital gene expression and global mapping of polyadenylation sites with PolyA-Seq	Expression profiling by high throughput sequencing	Canis lupus familiaris Homo sapiens Macaca mulatta Mus musculus Rattus norvegicus	26	BED SRA Run Selector	Adnan Derti	Jun 25, 2011
GSE214304	Nascent transcription upon interferon-α2 stimulation on human and rhesus macaque lymphoblastoid cell lines	Other	Homo sapiens Macaca mulatta	12	BED BW	Robin D. Dowell	Oct 02, 2022
GSE124711	Comparative Analysis of Gammaherpesvirus Circular RNA	Other	Homo sapiens Human gammaherpesvirus 8 Macaca mulatta Macacine gammaherpesvirus 4 Murid herpesvirus 68 Mus musculus	10	BED SRA Run Selector	Erik K Flemington	Jan 07, 2019
GSE120271	RNA-seq and ChIP-seq for human-specific regulation of neural maturation identified by cross-primate transcriptomics	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Gorilla Homo sapiens Macaca mulatta Pan paniscus Pan troglodytes	79	BED BEDGRAPH TXT SRA Run Selector	Fred H Gage	Sep 20, 2020
GSE24538	Ab initio identification of transcription start sites (TSSs) in the Rhesus macaque genome by histone modification and RNA-Seq	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Macaca mulatta	3	BED BEDGRAPH TXT SRA Run Selector	Dali Han	Oct 19, 2010
GSE41128	Stress-associated H3K4 methylation accumulates during postnatal development and aging of Rhesus macaque brain	Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta	5	BED TXT SRA Run Selector	Dali Han	Apr 01, 2013
GSE216917	Human gene regulatory evolution is driven by divergence in cis and trans	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Macaca mulatta	22	BED BW TSV	Tyler J Hansen	Dec 22, 2023
GSE167579	Comparative 3D Genome Architecture in Vertebrates (Hi-C)	Other	Bos taurus Canis lupus familiaris Danio rerio Felis catus Gallus gallus Homo sapiens Macaca mulatta Mus musculus Oryctolagus cuniculus Ovis aries Rattus norvegicus	25	BED HDF5 XLS SRA Run Selector	Mengnan He	Apr 12, 2022
GSE167581	Comparative 3D Genome Architecture in Vertebrates	Expression profiling by high throughput sequencing Other	Bos taurus Canis lupus familiaris Danio rerio Felis catus Gallus gallus Homo sapiens Macaca mulatta Mus musculus Oryctolagus cuniculus Ovis aries Rattus norvegicus Sus scrofa	54	BED HDF5 XLS	Mengnan He	Apr 12, 2022
GSE90720	Fox Family Protein Jumu Reads 6mA-DNA Codes and Contributes to Zygotic Gene Activation	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Drosophila melanogaster Macaca mulatta Mus musculus Rattus norvegicus	22	BED TXT SRA Run Selector	Shunmin He	Jan 14, 2023
GSE213693	Comparative 3D genomic architectures elucidate the function of the adaptive human-specific inversions in human brain evolution	Other	Homo sapiens Macaca mulatta	2	BED BEDPE	Ying Liu	May 22, 2024
GSE163177	3D Genome of macaque fetal brain reveals evolutionary innovations during primate corticogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta	18	BED BEDPE BW HIC NARROWPEAK TXT SRA Run Selector	Yuting Liu	Dec 15, 2020
GSE175679	Distinct nuclear compartment-associated genome architecture in the developing mammalian brain	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus	62	BED BW H5 SRA Run Selector	Tomasz Nowakowski	May 28, 2021
GSE197926	TAD Evolutionary and functional characterization reveals diversity in mammalian TAD boundary properties and function	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Hylobates moloch Macaca mulatta Mus caroli Mus musculus Mus pahari Nomascus leucogenys Rattus norvegicus	85	BED BEDGRAPH BIGWIG BW COOL XLSX	Mariam Okhovat	Oct 20, 2023
GSE60838	Evolutionary changes in promoter and enhancer activity during corticogenesis (non-human)	Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta Mus musculus	39	BED BW SRA Run Selector	Steven K Reilly	Mar 06, 2015
GSE63649	Evolutionary changes in promoter and enhancer activity during human corticogenesis	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus	63	BED BW	Steven K Reilly	Mar 06, 2015