GEO Browser - GEO

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37 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Macaca mulatta		BW
GSE128537	Transcriptomic and open chromatin atlas of high-resolution anatomical regions in the rhesus macaque brain	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta	449	BW GTF TXT SRA Run Selector	keying Lu	Dec 30, 2019
GSE264656	SIV infection and ARV treatment reshape the transcriptional and epigenetic profile of naïve and memory T cells in vivo (ATAC-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta Macaca nemestrina	120	BW NARROWPEAK	Jason Brenchley	May 10, 2024
GSE67978	Epigenomic annotation of gene regulatory alterations during evolution of the primate brain	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus Pan troglodytes	98	BEDGRAPH BW NARROWPEAK TXT SRA Run Selector	Menno P Creyghton	Jan 13, 2016
GSE197926	TAD Evolutionary and functional characterization reveals diversity in mammalian TAD boundary properties and function	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Hylobates moloch Macaca mulatta Mus caroli Mus musculus Mus pahari Nomascus leucogenys Rattus norvegicus	85	BED BEDGRAPH BIGWIG BW COOL XLSX	Mariam Okhovat	Oct 20, 2023
GSE114191	Repurposing of promoters and enhancers during mammalian evolution	Expression profiling by high throughput sequencing	Callithrix jacchus Homo sapiens Macaca mulatta Mus musculus Oryctolagus cuniculus Rattus norvegicus	78	BW SRA Run Selector	Francesco Nicola Carelli	Oct 01, 2018
GSE135791	Pachytene piRNA Genes Are Rapidly Diverging Among Modern Humans	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus	72	BW NARROWPEAK TXT SRA Run Selector	Tianxiong Yu	Dec 23, 2019
GSE63649	Evolutionary changes in promoter and enhancer activity during human corticogenesis	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus	63	BED BW	Steven K Reilly	Mar 06, 2015
GSE175679	Distinct nuclear compartment-associated genome architecture in the developing mammalian brain	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus	62	BED BW H5 SRA Run Selector	Tomasz Nowakowski	May 28, 2021
GSE111930	An endogenous retrovirus-derived long non-coding RNA promotes fetal cardiomyocyte migration in primates	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Gorilla gorilla Homo sapiens Macaca mulatta Mus musculus Pan troglodytes	60	BW HIC TDF TXT SRA Run Selector	Lei Tian	Aug 11, 2020
GSE166104	The Testis-Specific Transcription Factor TCFL5 Responds to A-MYB to Elaborate Male Meiotic Program in Mammals	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Non-coding RNA profiling by high throughput sequencing	Macaca mulatta Mus musculus	57	BW SRA Run Selector	Tianxiong Yu	Jan 11, 2023
GSE42413	The Evolution of Lineage-Specific Regulatory Activities in the Human Embryonic Limb	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus	56	BAM BED BW SRA Run Selector	Justin Cotney	Jul 02, 2013
GSE130871	Hominin-specific regulatory elements selectively emerged in oligodendrocytes and are disrupted in autism patients	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Callithrix jacchus Homo sapiens Macaca mulatta Pan troglodytes	49	BW NARROWPEAK TXT SRA Run Selector	Menno P Creyghton	Dec 20, 2019
GSE158934	Evolution of regulatory signatures in primate cortical neurons at cell-type resolution	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta Pan troglodytes	46	BW	Stella Dracheva	Oct 03, 2020
GSE130570	Chromatin Accessibility and Transcription Dynamics During In Vitro Astrocyte Differentiation of Huntington’s Disease Monkey Pluripotent Stem Cells.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta	40	BW SRA Run Selector	Isaac Kremsky	Jun 08, 2020
GSE60838	Evolutionary changes in promoter and enhancer activity during corticogenesis (non-human)	Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta Mus musculus	39	BED BW SRA Run Selector	Steven K Reilly	Mar 06, 2015
GSE106580	Nucleosome profiles for mammalian tissues	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus Sus scrofa Tupaia belangeri	39	BW	Yumei Li	Aug 06, 2018
GSE158931	Evolution of regulatory signatures in primate cortical neurons at cell-type resolution [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta Pan troglodytes	32	BW XLSX SRA Run Selector	Stella Dracheva	Oct 03, 2020
GSE233467	2-hydroxypropyl-beta-cyclodextrin treatment induces modest immune activation in healthy rhesus macaques	Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta	31	BW NARROWPEAK	Jason Brenchley	Jun 12, 2023
GSE239746	A somatic cell cloned rhesus monkey obtained by trophoblast replacement	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Macaca fascicularis Macaca mulatta	28	BW TXT	Liao Zhaodi	Aug 01, 2023
GSE85337	Natural Selection has Shaped Coding and Non-coding Transcription in Primate CD4+ T-cells	Expression profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus Pan troglodytes Rattus norvegicus	24	BW SRA Run Selector	Charles G Danko	Dec 29, 2016