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14 series

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Accession	Title	Series type(s)	Organism(s)	Samples	GDS	Supplementary	Contact	Release date
Filter			Homo sapiens			BAM	ENCODE DCC
GSE24565	Small RNA-seq from ENCODE/Cold Spring Harbor Lab	Non-coding RNA profiling by high throughput sequencing	Homo sapiens	87		BAM BEDRNAELEMENTS BIGWIG GTF PDF TXT SRA Run Selector	ENCODE DCC	Oct 08, 2010
GSE26284	ENCODE Cold Spring Harbor Labs Long RNA-seq	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	84		BAM BB BEDRNAELEMENTS BIGWIG GFF GTF PDF SRA Run Selector	ENCODE DCC	Dec 28, 2010
GSE26328	DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Human]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	53		BAM BIGWIG BROADPEAK NARROWPEAK TXT SRA Run Selector	ENCODE DCC	Dec 29, 2010
GSE27221	ENCODE Genome Institute of Singapore RNA-Seq	Expression profiling by high throughput sequencing	Homo sapiens	4		BAM BIGWIG SRA Run Selector	ENCODE DCC	Feb 14, 2011
GSE28867	ENCODE Genome Institute of Singapore DNA Paired-End Ditags	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	8		BAM SRA Run Selector	ENCODE DCC	Apr 27, 2011
GSE29611	Histone Modifications by ChIP-seq from ENCODE/Broad Institute	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	296		BAM BIGWIG BROADPEAK TXT SRA Run Selector	ENCODE DCC	Jun 02, 2011
GSE29692	DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	208		BAM BIGWIG BROADPEAK NARROWPEAK SRA Run Selector	ENCODE DCC	Jun 03, 2011
GSE30263	CTCF Binding Sites by ChIP-seq from ENCODE/University of Washington	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	174		BAM BIGWIG BROADPEAK NARROWPEAK SRA Run Selector	ENCODE DCC	Jun 29, 2011
GSE30567	ENCODE Cold Spring Harbor Labs Long RNA-seq (hg19)	Expression profiling by high throughput sequencing	Homo sapiens	99		BAM BEDRNAELEMENTS BIGWIG GFF GTF PDF TXT SRA Run Selector	ENCODE DCC	Jul 13, 2011
GSE33480	RNA-seq from ENCODE/Caltech	Expression profiling by high throughput sequencing	Homo sapiens	24		BAI BAM BIGBED BIGWIG GTF TXT SRA Run Selector	ENCODE DCC	Jul 12, 2012
GSE49417	The conserved organization of the human and mouse transcriptomes	Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	64		BAM BEDRNAELEMENTS BIGWIG GFF GTF PDF	ENCODE DCC	Nov 20, 2014
GSE51334	DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions	Other	Homo sapiens Mus musculus	993		BAM BED BIGWIG BROADPEAK NARROWPEAK PAIR TSV TXT	ENCODE DCC	Nov 20, 2014
GSE51336	Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	266		BAM BED BIGWIG BROADPEAK NARROWPEAK WIG	ENCODE DCC	Nov 20, 2014
GSE51341	Conservation of mouse-human trans-regulatory circuitry despite high cis-regulatory divergence	Other	Homo sapiens Mus musculus	32		BAM BED BIGWIG BROADPEAK NARROWPEAK TXT WIG	ENCODE DCC	Nov 19, 2014