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1595 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Homo sapiens		BEDGRAPH
GSE18184	Genome-wide localization of the RNA polymerase III transcription machinery in human cells	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	5	BEDGRAPH SRA Run Selector	Nicolo Riggi	Feb 11, 2010
GSE21442	Comprehensive analysis of orphan CpG islands identifes novel promoters with conserved DNA methylation dynamics	Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	32	BEDGRAPH SRA Run Selector	Adrian P Bird	Oct 05, 2010
GSE22453	Custom MHC array analysis of lymphoblastoid cell lines	Expression profiling by genome tiling array	Homo sapiens	18	BEDGRAPH CEL GFF	Claire Vandiedonck	May 23, 2011
GSE22609	Genome-Wide Maps of WT and DBDmut Estrogen Receptor in Human Breast Cancer Cells	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	2	BED BEDGRAPH FA	Joshua D Stender	Jun 30, 2010
GSE22610	Genome-Wide Analysis of Estrogen Receptor-α DNA Binding and Tethering Mechanisms	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	26	BED BEDGRAPH CEL FA	Joshua D Stender	Jun 30, 2010
GSE22666	Genome-wide characterization of long nonpolyadenylated RNAs	Expression profiling by high throughput sequencing	Homo sapiens	4	BEDGRAPH TXT SRA Run Selector	Ling-Ling Chen	Jul 01, 2012
GSE23109	Genome-wide analysis of RNAs associated with Lin28	Expression profiling by high throughput sequencing	Homo sapiens	2	BEDGRAPH SRA Run Selector	Ling-Ling Chen	Jan 18, 2011
GSE23316	ENCODE Caltech RNA-seq	Expression profiling by high throughput sequencing	Homo sapiens	36	BED12 BEDGRAPH BOWTIE FASTA PSL RPKM SRA Run Selector	ENCODE DCC	Jul 30, 2010
GSE24399	Genome-wide characterization of long nonpolyadenylated RNAs, experiment II	Expression profiling by high throughput sequencing	Homo sapiens	12	BEDGRAPH SRA Run Selector	Ling-Ling Chen	Jan 28, 2011
GSE24632	ZNF274 colocalizes with the histone methyltransferase SETDB1 at ZNF 3' ends.	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	14	BAM BED BEDGRAPH BIGWIG TAGALIGN SRA Run Selector	Philip Cayting	Nov 15, 2010
GSE24674	Genome-wide analysis of GATA1, GATA2, RUNX1, FLI1 and SCL binding in primary human megakaryocytes	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	6	BEDGRAPH TXT SRA Run Selector	Samuel David Foster	Jun 01, 2011
GSE27404	Deep sequencing and functional annotation reveal miRNAs implicated in the cell senescence phenotype	Non-coding RNA profiling by high throughput sequencing	Homo sapiens	2	BEDGRAPH SRA Run Selector	Dario Boffelli	Aug 09, 2011
GSE27443	RNA-Seq of rRNA depleted circulating endothelial progenitor cells (cEPCs) in trisomy 21 and euploid samples	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	2	BED BEDGRAPH TXT	Valerio Costa	May 05, 2011
GSE27537	LATE-REPLICATING HETEROCHROMATIN IS CHARACTERISED BY DECREASED CYTOSINE METHYLATION IN THE HUMAN GENOME (HELP assay)	Methylation profiling by genome tiling array	Homo sapiens	2	BEDGRAPH PAIR TXT	John Greally	Aug 06, 2011
GSE27538	LATE-REPLICATING HETEROCHROMATIN IS CHARACTERISED BY DECREASED CYTOSINE METHYLATION IN THE HUMAN GENOME	Expression profiling by array Methylation profiling by genome tiling array	Homo sapiens	4	BEDGRAPH PAIR	John Greally	Aug 06, 2011
GSE27823	Reprogramming Transcriptional Responses through Functionally-Distinct Classes of Enhancers in Prostate Cancer Cells [ChIP-Seq, Gro-Seq]	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	30	BED BEDGRAPH FA SRA Run Selector	Christopher Benner	May 15, 2011
GSE27824	Reprogramming Transcriptional Responses through Functionally-Distinct Classes of Enhancers in Prostate Cancer Cells	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	42	BED BEDGRAPH FA	Christopher Benner	May 15, 2011
GSE28115	CBX3 Regulates Efficient RNA Processing Genome Wide	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	39	BED BEDGRAPH GFF GPR PAIR SRA Run Selector	Bing Ren	May 24, 2012
GSE28332	The Demethylase JMJD2C/KDM4C Localizes to H3K4me3 Positive Transcription Start Sites	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	30	BEDGRAPH CEL	Marianne Terndrup Pedersen	Jan 09, 2014
GSE29006	mRNA-seq of Human Airway Epithelial Cells	Expression profiling by high throughput sequencing	Homo sapiens	8	BEDGRAPH GTF TXT SRA Run Selector	Avrum Spira	Jun 01, 2011