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10088 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Homo sapiens		BIGWIG	ENCODE DCC
GSE51336	Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	266	WIG NARROWPEAK BROADPEAK BIGWIG BED BAM	ENCODE DCC	Nov 20, 2014
GSE51341	Conservation of mouse-human trans-regulatory circuitry despite high cis-regulatory divergence	Other	Homo sapiens Mus musculus	32	WIG TXT NARROWPEAK BROADPEAK BIGWIG BED BAM	ENCODE DCC	Nov 19, 2014
GSE24565	Small RNA-seq from ENCODE/Cold Spring Harbor Lab	Non-coding RNA profiling by high throughput sequencing	Homo sapiens	87	TXT PDF GTF BIGWIG BEDRNAELEMENTS BAM SRA Run Selector	ENCODE DCC	Oct 08, 2010
GSE26328	DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Human]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	53	TXT NARROWPEAK BROADPEAK BIGWIG BAM SRA Run Selector	ENCODE DCC	Dec 29, 2010
GSE29611	Histone Modifications by ChIP-seq from ENCODE/Broad Institute	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	296	TXT BROADPEAK BIGWIG BAM SRA Run Selector	ENCODE DCC	Jun 02, 2011
GSE30567	ENCODE Cold Spring Harbor Labs Long RNA-seq (hg19)	Expression profiling by high throughput sequencing	Homo sapiens	99	TXT PDF GTF GFF BIGWIG BEDRNAELEMENTS BAM SRA Run Selector	ENCODE DCC	Jul 13, 2011
GSE31363	Transcription Factor Binding Sites by Epitope-Tag ChIP-seq from ENCODE/University of Chicago	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	12	TXT NARROWPEAK BIGWIG SRA Run Selector	ENCODE DCC	Aug 12, 2011
GSE31477	ENCODE Transcription Factor Binding Sites by ChIP-seq from Stanford/Yale/USC/Harvard	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	426	TXT NARROWPEAK BIGWIG SRA Run Selector	ENCODE DCC	Aug 30, 2011
GSE31755	Histone Modifications by ChIP-seq from ENCODE/Stanford/Yale/Davis/Harvard	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	32	TXT NARROWPEAK BIGWIG SRA Run Selector	ENCODE DCC	Aug 31, 2011
GSE32465	Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	399	TXT BROADPEAK BIGWIG SRA Run Selector	ENCODE DCC	Sep 29, 2011
GSE32970	Open Chromatin by DNaseI HS from ENCODE/OpenChrom(Duke University)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	97	TXT NARROWPEAK BIGWIG SRA Run Selector	ENCODE DCC	Oct 14, 2011
GSE33213	Open Chromatin TFBS by ChIP-seq from ENCODE/Open Chrom(UT Austin)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	79	TXT NARROWPEAK BIGWIG SRA Run Selector	ENCODE DCC	Oct 25, 2011
GSE33480	RNA-seq from ENCODE/Caltech	Expression profiling by high throughput sequencing	Homo sapiens	24	TXT GTF BIGWIG BIGBED BAM BAI SRA Run Selector	ENCODE DCC	Jul 12, 2012
GSE34448	RNA Subcellular CAGE Localization from ENCODE/RIKEN	Expression profiling by high throughput sequencing	Homo sapiens	78	TXT GTF BIGWIG BEDRNAELEMENTS BED SRA Run Selector	ENCODE DCC	Dec 16, 2011
GSE35239	Open Chromatin by FAIRE from ENCODE/OpenChrom(UNC Chapel Hill)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	37	TXT NARROWPEAK BIGWIG SRA Run Selector	ENCODE DCC	Jan 24, 2012
GSE35584	RNA-seq from ENCODE/HudsonAlpha	Expression profiling by high throughput sequencing	Homo sapiens	20	TXT GTF BIGWIG SRA Run Selector	ENCODE DCC	Apr 27, 2012
GSE35585	RIP-seq from ENCODE/SUNY Albany	Other	Homo sapiens	8	TXT BROADPEAK BIGWIG SRA Run Selector	ENCODE DCC	Jun 06, 2012
GSE35586	Nucleosome Position by MNase-seq from ENCODE/Stanford/BYU	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	2	TXT BIGWIG SRA Run Selector	ENCODE DCC	Apr 20, 2012
GSE51334	DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions	Other	Homo sapiens Mus musculus	993	TXT TSV PAIR NARROWPEAK BROADPEAK BIGWIG BED BAM	ENCODE DCC	Nov 20, 2014
GSE78288	small RNA-seq from GM12878 (ENCSR000AEJ)	Expression profiling by high throughput sequencing	Homo sapiens	2	TXT TSV BIGWIG	ENCODE DCC	Mar 18, 2016