GEO Browser - GEO

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381 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Homo sapiens		GFF
GSE21714	Comparative methylome analysis of benign and malignant peripheral nerve sheath tumors	Methylation profiling by high throughput sequencing	Homo sapiens	3	BAM GFF SRA Run Selector	Gareth Wilson	Jan 01, 2011
GSE26284	ENCODE Cold Spring Harbor Labs Long RNA-seq	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	84	BAM BB BEDRNAELEMENTS BIGWIG GFF GTF PDF SRA Run Selector	ENCODE DCC	Dec 28, 2010
GSE30567	ENCODE Cold Spring Harbor Labs Long RNA-seq (hg19)	Expression profiling by high throughput sequencing	Homo sapiens	99	BAM BEDRNAELEMENTS BIGWIG GFF GTF PDF TXT SRA Run Selector	ENCODE DCC	Jul 13, 2011
GSE30833	Genome Sequencing of Gastric Cancer Reveals Diverse Mutational and Pathogen Signatures	Genome variation profiling by high throughput sequencing	Homo sapiens	8	BAM GFF TXT SRA Run Selector	Axel HILLMER	Dec 05, 2012
GSE49417	The conserved organization of the human and mouse transcriptomes	Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	64	BAM BEDRNAELEMENTS BIGWIG GFF GTF PDF	ENCODE DCC	Nov 20, 2014
GSE18457	ChIP-chip from HCT116 cells treated with MMS and LNCaP cells with ATF3	Genome binding/occupancy profiling by genome tiling array Expression profiling by array	Homo sapiens	10	BAR BED GFF PAIR PDF TXT XLS	Yujiro Tanaka	Oct 01, 2010
GSE14603	Gene Body Hypermethylation of ATM in Peripheral Blood DNA of Bilateral Breast Cancer Patients	Methylation profiling by genome tiling array	Homo sapiens	14	BED GFF PAIR WIG	James Flanagan	Jan 29, 2009
GSE19461	Activin/Nodal signalling controls divergent transcriptional networks in pluripotent and endoderm progenitors.	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	5	BED GFF TXT SRA Run Selector	Matthew Trotter	Nov 11, 2011
GSE24382	Lamin binding profiles in the ENCODE regions	Genome binding/occupancy profiling by genome tiling array	Homo sapiens	6	BED GFF	Ghia Euskirchen	Jan 10, 2011
GSE24398	Diverse roles and interactions of the SWI/SNF chromatin-remodeling complex revealed using global approaches	Genome binding/occupancy profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array	Homo sapiens	10	BED GFF	Ghia Euskirchen	Jan 10, 2011
GSE26097	Pluripotency Factors Regulate Definitive Endoderm Specification through Eomesodermin	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	2	BED GFF TXT SRA Run Selector	Matthew Trotter	Jan 25, 2011
GSE28115	CBX3 Regulates Efficient RNA Processing Genome Wide	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	39	BED BEDGRAPH GFF GPR PAIR SRA Run Selector	Bing Ren	May 24, 2012
GSE59980	Analysis of an artificial zinc finger epigenetic modulator: widespread binding but limited regulation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	25	BED GFF TXT SRA Run Selector	Matt Grimmer	Aug 01, 2014
GSE60106	Global loss of DNA methylation uncovers intronic enhancers in genes	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	11	BED BW GFF SRA Run Selector	Peggy J Farnham	Sep 10, 2014
GSE71468	Co-regulation of splicing by Rbfox1 and hnRNP M	Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	23	BED GFF	Chia-ho Lin	Apr 21, 2016
GSE87921	RAMPAGE from GM12878 (ENCSR000AEI)	Expression profiling by high throughput sequencing	Homo sapiens	2	BED BIGBED BIGWIG GFF TSV TXT	ENCODE DCC	Nov 08, 2016
GSE87922	RAMPAGE from K562 (ENCSR000AER)	Expression profiling by high throughput sequencing	Homo sapiens	2	BED BIGBED BIGWIG GFF TSV TXT	ENCODE DCC	Nov 08, 2016
GSE87923	RAMPAGE from urinary bladder (ENCSR000AGJ)	Expression profiling by high throughput sequencing	Homo sapiens	2	BED BIGBED BIGWIG GFF TSV TXT	ENCODE DCC	Nov 08, 2016
GSE87924	RAMPAGE from cerebellum (ENCSR000AGK)	Expression profiling by high throughput sequencing	Homo sapiens	2	BED BIGBED BIGWIG GFF TSV TXT	ENCODE DCC	Nov 08, 2016
GSE87925	RAMPAGE from diencephalon (ENCSR000AGL)	Expression profiling by high throughput sequencing	Homo sapiens	2	BED BIGBED BIGWIG GFF TSV TXT	ENCODE DCC	Nov 08, 2016