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623 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Homo sapiens		HIC
GSE118716	Epigenetic reprogramming at estrogen-receptor binding sites alters 3D chromatin landscape in endocrine resistant breast cancer	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	40	BB BW HIC TXT VCF	Joanna Achinger-Kawecka	Dec 11, 2019
GSE63525	A three-dimensional map of the human genome at kilobase resolution reveals prinicples of chromatin looping	Other	Homo sapiens Mus musculus	200	BED HIC RTF TXT SRA Run Selector	Suhas Rao	Dec 11, 2014
GSE98119	The energetics and physiological impact of cohesin extrusion	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	352	BED BEDGRAPH BW HIC NARROWPEAK TXT SRA Run Selector	Seolkyoung Jung	May 01, 2018
GSE98552	Chromatin structure and CTCF across the MCF10 breast cancer progression series (HiC)	Other Third-party reanalysis	Homo sapiens	4	BED HIC MATRIX SRA Run Selector	Jonathan AR Gordon	May 23, 2017
GSE103477	Transcription elongation regulates genome 3D structure	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens	253	BED BEDGRAPH HIC TXT SRA Run Selector	Christopher Benner	Aug 23, 2018
GSE104579	DNA methylation state is associated with the formation of loops and links in hematopoietic stem cells	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens	18	BED BW HIC	Jianzhong Su	Nov 24, 2017
GSE105028	Architectural proteins and pluripotency factors cooperate to orchestrate the transcriptional response of hESCs to temperature stress	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	93	BED BW HIC SRA Run Selector	Victor Corces	Aug 03, 2018
GSE107447	Altered chromosomal topology drives oncogenic programs in SDH-deficient GISTs	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens	100	BED BW CSV HIC TXT	Yotam Drier	Oct 16, 2019
GSE109924	TAD cliques shape the 4-dimensional genome during dual lineage terminal differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	34	BED BW FPKM_TRACKING HIC SRA Run Selector	Philippe Collas	Feb 23, 2019
GSE116869	Oncogenic Notch promotes long-range regulatory interactions within hyperconnected 3D cliques [MB157_HiChIP]	Other	Homo sapiens	3	BED HIC SRA Run Selector	YEQIAO ZHOU	Feb 27, 2019
GSE116872	Oncogenic Notch promotes long-range regulatory interactions within hyperconnected 3D cliques [HCC1599_HiChIP]	Other	Homo sapiens	2	BED HIC SRA Run Selector	YEQIAO ZHOU	Feb 27, 2019
GSE116875	Oncogenic Notch promotes long-range regulatory interactions within hyperconnected 3D cliques [Rec-1_HiChIP]	Other	Homo sapiens	2	BED HIC SRA Run Selector	YEQIAO ZHOU	Feb 27, 2019
GSE116876	Oncogenic Notch promotes long-range regulatory interactions within hyperconnected 3D cliques	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	87	BED BW HIC TXT	YEQIAO ZHOU	Feb 27, 2019
GSE118712	Epigenetic reprogramming at estrogen-receptor binding sites alters the 3D chromatin landscape in endocrine resistant breast cancer [Hi-C]	Other	Homo sapiens	9	BED HIC TSV TXT SRA Run Selector	Joanna Achinger-Kawecka	Dec 11, 2019
GSE120771	Selective Disruption of Core Regulatory Transcription	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	109	BED HIC TXT	Javed Khan	May 31, 2019
GSE122977	Analysis of 3D interactions identifies candidate host genes that transposable elements potentially regulate	Other	Homo sapiens Mus musculus	24	BED BEDGRAPH HIC	Ramya Raviram	Nov 28, 2018
GSE126199	Integrative vascular endothelial cell genomics identify AIDA as a coronary artery disease candidate gene (Hi-C)	Other	Homo sapiens	4	BED BEDPE BW HIC SRA Run Selector	Guillaume Lettre	Jun 25, 2019
GSE128952	A DNA tumor virus globally reprograms host 3D genome architecture to achieve immortal growth	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	32	BED BEDGRAPH HIC NARROWPEAK TXT SRA Run Selector	Sizun Jiang	Dec 22, 2022
GSE131651	NSD2 overexpression links drives clustered chromatin and transcriptional changes in a subset of insulated domains of insulated domains	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	48	BED BEDGRAPH BW HIC NARROWPEAK TXT SRA Run Selector	Priscillia Lhoumaud	Sep 03, 2019
GSE133163	Hi-C to Identify Interactions between Distant Genomic Loci due to BRD4-NUT-mediated Megadomain Formation	Other	Homo sapiens	32	BED BEDPE BW HIC SRA Run Selector	Kyle Eagen	Apr 01, 2020