GEO Browser - GEO

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38 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Bos taurus		BED
GSE262830	Cattle Cleavage Under Targets & Release Using Nuclease (CUT&RUN) for CENP-A locus identification	Genome binding/occupancy profiling by high throughput sequencing	Bos taurus	1	BED	Brenda Murdoch	Oct 02, 2024
GSE263098	Cattle Y-chromosome methylation profile from long reads sequencing data	Other	Bos taurus	2	BED	Brenda Murdoch	Oct 02, 2024
GSE185079	Chromatin profiling of the innate immune response in bovine MDBK cells	Genome binding/occupancy profiling by high throughput sequencing	Bos taurus	4	BED BW SRA Run Selector	Edward Chuong	Oct 02, 2021
GSE193640	Chromatin remodeling in bovine oocytes and preimplantation embryos	Genome binding/occupancy profiling by high throughput sequencing	Bos taurus	81	BED	Chuan Zhou	Feb 16, 2023
GSE167581	Comparative 3D Genome Architecture in Vertebrates	Expression profiling by high throughput sequencing Other	Bos taurus Canis lupus familiaris Danio rerio Felis catus Gallus gallus Homo sapiens Macaca mulatta Mus musculus Oryctolagus cuniculus Ovis aries Rattus norvegicus Sus scrofa	54	BED HDF5 XLS	Mengnan He	Apr 12, 2022
GSE167579	Comparative 3D Genome Architecture in Vertebrates (Hi-C)	Other	Bos taurus Canis lupus familiaris Danio rerio Felis catus Gallus gallus Homo sapiens Macaca mulatta Mus musculus Oryctolagus cuniculus Ovis aries Rattus norvegicus	25	BED HDF5 XLS SRA Run Selector	Mengnan He	Apr 12, 2022
GSE158430	Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Gallus gallus Sus scrofa	334	BED TXT	Colin Kern	Sep 24, 2020
GSE158414	Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (ATAC-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Sus scrofa	31	BED SRA Run Selector	Colin Kern	Sep 24, 2020
GSE158416	Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (CTCF ChIP-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Gallus gallus Sus scrofa	48	BED SRA Run Selector	Colin Kern	Sep 24, 2020
GSE158418	Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (H3K27ac ChIP-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Gallus gallus Sus scrofa	48	BED SRA Run Selector	Colin Kern	Sep 24, 2020
GSE158419	Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (H3K27me3 ChIP-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Gallus gallus Sus scrofa	48	BED SRA Run Selector	Colin Kern	Sep 24, 2020
GSE158427	Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (H3K4me1 ChIP-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Gallus gallus Sus scrofa	48	BED SRA Run Selector	Colin Kern	Sep 24, 2020
GSE158429	Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (H3K4me3 ChIP-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Gallus gallus Sus scrofa	48	BED SRA Run Selector	Colin Kern	Sep 24, 2020
GSE119263	Comparative sperm methylome analysis provide insights into complex phenotypes and epigenome evolution	Methylation profiling by high throughput sequencing	Bos taurus	18	BED SRA Run Selector	Lingzhao Fang	Mar 20, 2019
GSE74026	Differential DNA Methylation Analysis without a Reference Genome	Methylation profiling by high throughput sequencing	Bos taurus Cyprinus carpio Homo sapiens	44	BED FA SRA Run Selector	Christoph Bock	Dec 03, 2015
GSE131851	Divergences of sperm DNA methylomes between monozygotic twin seed bulls reveal fertility-related genes	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Bos taurus	8	BED	Shengli Zhang	Jan 01, 2020
GSE131850	Divergences of sperm DNA methylomes between monozygotic twin seed bulls reveal fertility-related genes (WGBS)	Methylation profiling by high throughput sequencing	Bos taurus	2	BED SRA Run Selector	Shengli Zhang	Jan 01, 2020
GSE110040	Efficient derivation of stable primed pluripotent embryonic stem cells from bovine blastocysts	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Bos taurus	20	BED TXT	Pablo Ross	Feb 11, 2018
GSE110039	Efficient derivation of stable primed pluripotent embryonic stem cells from bovine blastocysts [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Bos taurus	6	BED	Pablo Ross	Feb 11, 2018
GSE185080	Epigenomic profiling of the innate immune response in bovine MDBK cells	Genome binding/occupancy profiling by high throughput sequencing	Bos taurus	20	BED BW TXT SRA Run Selector	Edward Chuong	Oct 02, 2021