GEO Browser - GEO

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200 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome variation profiling by high throughput sequencing			SRA Run Selector
GSE81233	Single Cell DNA Methylome Sequencing of Human Preimplantation Embryos	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Homo sapiens Mus musculus	673	BED FPKM_TRACKING TXT SRA Run Selector	Hongshan Guo	Dec 19, 2017
GSE64881	Genome Wide Characterization of Genome Organization in Mouse ES cells	Genome variation profiling by high throughput sequencing Other	Mus musculus other sequences	477	TXT SRA Run Selector	Robert A Beagrie	Mar 08, 2017
GSE22657	High-throughput semi-quantitative analysis of insertional mutations in heterogeneous tumors	Genome variation profiling by high throughput sequencing	Mus musculus	453	BED TXT SRA Run Selector	Jos Jonkers	Aug 12, 2011
GSE132139	Determinants for efficient editing with Cas9-mediated recombineering in Escherichia coli	Genome variation profiling by high throughput sequencing	Escherichia coli	302	TXT SRA Run Selector	Alaksh Choudhury	Jun 06, 2020
GSE38397	Comparative oncogenomic analysis of copy number alterations in human and zebrafish tumors enables cancer driver discovery	Genome variation profiling by high throughput sequencing	Danio rerio	294	TXT SRA Run Selector	Sebastian Hoersch	Dec 31, 2013
GSE125326	Crossovers from B6xCAST F1 PRDM9-Humanized/CAST testes	Genome variation profiling by high throughput sequencing	Mus musculus	219	TXT SRA Run Selector	Anjali Gupta Hinch	Mar 18, 2019
GSE150390	Complementation can maintain a quasispecies of drug sensitive and resistant HIV	Genome variation profiling by high throughput sequencing	Human immunodeficiency virus 1	207	CSV SRA Run Selector	Alex Sigal	May 13, 2020
GSE110145	Genome-wide association study and transcriptome analysis provide new insights into the white/red earlobe color formation in chicken	Genome variation profiling by high throughput sequencing	Gallus gallus	200	TXT SRA Run Selector	Wei Luo	May 05, 2018
GSE142387	The genomic landscape of metastasis in treatment-naïve breast cancer models	Other Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Mus musculus	199	TXT VCF SRA Run Selector	Maxwell Lee	Apr 02, 2020
GSE163620	The conservation and divergence of epigenitic reprogramming during mammalian early development	Expression profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Mus musculus Rattus norvegicus Sus scrofa	188	BW TXT SRA Run Selector	Wei Xie	Nov 26, 2021
GSE171127	Comparative parallel meta-analysis of cells undergoing reprogramming to pluripotency and trophectoderm states	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Mus musculus	184	BETA BIGWIG MTX TSV TXT SRA Run Selector	Tommy Kaplan	Apr 28, 2022
GSE131977	Acquired resistance to combined BET and CDK4/6 inhibition in triple-negative breast cancer [Barcode]	Genome variation profiling by high throughput sequencing	Homo sapiens	174	TSV SRA Run Selector	Kornelia Polyak	Apr 08, 2020
GSE142442	Integrating Next Generation Sequencing with Morphology Improves Prognostic and Biologic Classification of Spitz Neoplasms [DNA-Seq]	Genome variation profiling by high throughput sequencing	Homo sapiens	158	VCF SRA Run Selector	Pedram Gerami	Aug 27, 2020
GSE152129	Multiplexed functional assessment of dominant genetic variants in CARD11	Other Genome variation profiling by high throughput sequencing	Homo sapiens	147	XLSX SRA Run Selector	Richard G James	Jul 01, 2020
GSE176412	Lens orientalis contributes quantitative trait loci and candidate genes associated with Ascochyta blight resistance in lentil	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Other	Lens culinaris Lens culinaris x Lens orientalis Lens orientalis	142	VCF SRA Run Selector	Ido Bar	Jun 09, 2021
GSE81713	Whole organism lineage tracing by combinatorial and cumulative genome editing	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Danio rerio Homo sapiens	136	JSON TXT SRA Run Selector	Jay Shendure	May 26, 2016
GSE131366	Distinct Contribution of DNA Methylation and Histone Acetylation to the Genomic Occupancy of Transcription Factors	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Mus musculus	126	BW TXT SRA Run Selector	Skirmantas Kriaucionis	Aug 06, 2020
GSE165330	Amniotes co-opt intrinsic genetic instability to protect germ-line genome integrity	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Other	Gallus gallus	123	BIGWIG CSV SF TXT SRA Run Selector	Jiafei Shen	Jan 24, 2023
GSE181579	IGF2BP1 induces neuroblastoma via a druggable feedforward loop with MYCN promoting 17q oncogene expression [human sWGS]	Genome variation profiling by high throughput sequencing	Homo sapiens	101	CSV SRA Run Selector	Danny Misiak	May 31, 2023
GSE113869	Rpd3L Contributes to the DNA Damage Sensitivity of Saccharomyces cerevisiae Checkpoint Mutants	Genome variation profiling by high throughput sequencing	Saccharomyces cerevisiae	100	TSV SRA Run Selector	Belén Gómez-González	Feb 27, 2019