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149 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome variation profiling by high throughput sequencing			TXT
GSE81233	Single Cell DNA Methylome Sequencing of Human Preimplantation Embryos	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Homo sapiens Mus musculus	673	BED FPKM_TRACKING TXT SRA Run Selector	Hongshan Guo	Dec 19, 2017
GSE100351	The DNA methylation landscape of glioblastoma disease progression shows extensive heterogeneity in time and space	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Homo sapiens	579	BED RPKM TXT	Christoph Bock	Jun 20, 2018
GSE64881	Genome Wide Characterization of Genome Organization in Mouse ES cells	Genome variation profiling by high throughput sequencing Other	Mus musculus other sequences	477	TXT SRA Run Selector	Robert A Beagrie	Mar 08, 2017
GSE22657	High-throughput semi-quantitative analysis of insertional mutations in heterogeneous tumors	Genome variation profiling by high throughput sequencing	Mus musculus	453	BED TXT SRA Run Selector	Jos Jonkers	Aug 12, 2011
GSE132139	Determinants for efficient editing with Cas9-mediated recombineering in Escherichia coli	Genome variation profiling by high throughput sequencing	Escherichia coli	302	TXT SRA Run Selector	Alaksh Choudhury	Jun 06, 2020
GSE38397	Comparative oncogenomic analysis of copy number alterations in human and zebrafish tumors enables cancer driver discovery	Genome variation profiling by high throughput sequencing	Danio rerio	294	TXT SRA Run Selector	Sebastian Hoersch	Dec 31, 2013
GSE142443	Integrating Next Generation Sequencing with Morphology Improves Prognostic and Biologic Classification of Spitz Neoplasms	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Homo sapiens	277	TXT	Pedram Gerami	Feb 26, 2020
GSE77276	The molecular landscape of hepatocellular carcinoma with portal vein tumor thrombosis	Non-coding RNA profiling by high throughput sequencing Methylation profiling by genome tiling array Genome variation profiling by high throughput sequencing Genome variation profiling by SNP array Expression profiling by high throughput sequencing	Homo sapiens	240	CEL CYCHP IDAT TXT	Jin Gu	Feb 17, 2017
GSE125326	Crossovers from B6xCAST F1 PRDM9-Humanized/CAST testes	Genome variation profiling by high throughput sequencing	Mus musculus	219	TXT SRA Run Selector	Anjali Gupta Hinch	Mar 18, 2019
GSE110145	Genome-wide association study and transcriptome analysis provide new insights into the white/red earlobe color formation in chicken	Genome variation profiling by high throughput sequencing	Gallus gallus	200	TXT SRA Run Selector	Wei Luo	May 05, 2018
GSE142387	The genomic landscape of metastasis in treatment-naïve breast cancer models	Other Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Mus musculus	199	TXT VCF SRA Run Selector	Maxwell Lee	Apr 02, 2020
GSE163620	The conservation and divergence of epigenitic reprogramming during mammalian early development	Expression profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Mus musculus Rattus norvegicus Sus scrofa	188	BW TXT SRA Run Selector	Wei Xie	Nov 26, 2021
GSE171127	Comparative parallel meta-analysis of cells undergoing reprogramming to pluripotency and trophectoderm states	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Mus musculus	184	BETA BIGWIG MTX TSV TXT SRA Run Selector	Tommy Kaplan	Apr 28, 2022
GSE87424	Enhancer Remodeling During Adaptive Bypass to MEK Inhibition Is Attenuated by Pharmacological Targeting of the P-TEFb Complex	Methylation profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Homo sapiens Mus musculus	167	BED CSV IDAT TXT XLSX	Gary L Johnson	Jan 20, 2017
GSE130270	Chromatin Loop Extrusion Plays a Fundamental Mechanistic Role in Antibody Class Switching	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	149	BEDGRAPH BROADPEAK BW TXT	Frederick W Alt	Sep 25, 2019
GSE29184	A draft map of cis-regulatory sequences in the mouse genome	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Mus musculus	143	BAM BIGWIG BOWTIE TXT	Bing Ren	Jul 01, 2012
GSE81713	Whole organism lineage tracing by combinatorial and cumulative genome editing	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Danio rerio Homo sapiens	136	JSON TXT SRA Run Selector	Jay Shendure	May 26, 2016
GSE130224	The Fundamental Role of Chromatin Loop Extrusion in Physiological V(D)J Recombination	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Genome variation profiling by high throughput sequencing	Mus musculus	133	BED BEDGRAPH BEDPE BW HIC TXT	Frederick W Alt	Aug 19, 2019
GSE131366	Distinct Contribution of DNA Methylation and Histone Acetylation to the Genomic Occupancy of Transcription Factors	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Mus musculus	126	BW TXT SRA Run Selector	Skirmantas Kriaucionis	Aug 06, 2020
GSE222193	Transient loss of Polycomb components induces an epigenetic cancer fate	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Drosophila melanogaster	126	BROADPEAK BW NARROWPEAK TXT VCF	Vincent Loubiere	Feb 28, 2024