GEO Browser - GEO

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55 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome variation profiling by high throughput sequencing	Mus musculus		SRA Run Selector
GSE81233	Single Cell DNA Methylome Sequencing of Human Preimplantation Embryos	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Homo sapiens Mus musculus	673	BED FPKM_TRACKING TXT SRA Run Selector	Hongshan Guo	Dec 19, 2017
GSE64881	Genome Wide Characterization of Genome Organization in Mouse ES cells	Genome variation profiling by high throughput sequencing Other	Mus musculus other sequences	477	TXT SRA Run Selector	Robert A Beagrie	Mar 08, 2017
GSE22657	High-throughput semi-quantitative analysis of insertional mutations in heterogeneous tumors	Genome variation profiling by high throughput sequencing	Mus musculus	453	BED TXT SRA Run Selector	Jos Jonkers	Aug 12, 2011
GSE125326	Crossovers from B6xCAST F1 PRDM9-Humanized/CAST testes	Genome variation profiling by high throughput sequencing	Mus musculus	219	TXT SRA Run Selector	Anjali Gupta Hinch	Mar 18, 2019
GSE142387	The genomic landscape of metastasis in treatment-naïve breast cancer models	Other Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Mus musculus	199	TXT VCF SRA Run Selector	Maxwell Lee	Apr 02, 2020
GSE163620	The conservation and divergence of epigenitic reprogramming during mammalian early development	Expression profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Mus musculus Rattus norvegicus Sus scrofa	188	BW TXT SRA Run Selector	Wei Xie	Nov 26, 2021
GSE171127	Comparative parallel meta-analysis of cells undergoing reprogramming to pluripotency and trophectoderm states	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Mus musculus	184	BETA BIGWIG MTX TSV TXT SRA Run Selector	Tommy Kaplan	Apr 28, 2022
GSE131366	Distinct Contribution of DNA Methylation and Histone Acetylation to the Genomic Occupancy of Transcription Factors	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Mus musculus	126	BW TXT SRA Run Selector	Skirmantas Kriaucionis	Aug 06, 2020
GSE95013	AICDA-induced epigenetic plasticity accelerates germinal center-derived lymphomagenesis	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Homo sapiens Mus musculus	88	TXT SRA Run Selector	Matt Teater	Jan 19, 2018
GSE130216	The Fundamental Role of Chromatin Loop Extrusion in Physiological V(D)J Recombination [HTGTS V(D)J-seq]	Genome variation profiling by high throughput sequencing Other	Mus musculus	76	TXT SRA Run Selector	Frederick W Alt	Aug 19, 2019
GSE130263	Chromatin Loop Extrusion Plays a Fundamental Mechanistic Role in Antibody Class Switching [3C-HTGTS]	Genome variation profiling by high throughput sequencing	Mus musculus	75	BEDGRAPH SRA Run Selector	Frederick W Alt	Sep 25, 2019
GSE153650	RNAseq and TCRseq analysis of entinostat treated bladder tumors	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Mus musculus	55	TXT VCF SRA Run Selector	William Kim	Sep 01, 2021
GSE136393	Retroelement insertion in a CRISPR/Cas9 editing site in the early embryo intensifies genetic mosaicism	Genome variation profiling by high throughput sequencing	Mus musculus	41	XLSX SRA Run Selector	Byungkuk Min	Oct 22, 2019
GSE110268	Upregulation of FOXD1 by YAP alleviates senescence and osteoarthritis	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Homo sapiens Mus musculus	39	TXT SRA Run Selector	yuqiong hu	Feb 17, 2019
GSE46210	Clonal expansion analysis of transposon insertions by high-throughput sequencing identifies candidate cancer genes in a PiggyBac mutagenesis screen	Genome variation profiling by high throughput sequencing	Mus musculus	34	BEDGRAPH SRA Run Selector	Caroline Friedel	Aug 28, 2013
GSE145921	Genomic and transcriptomic analysis of medulloblastoma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Homo sapiens Mus musculus	33	BED BW CSV TXT SRA Run Selector	Zaili Luo	Dec 31, 2021
GSE29509	The inactive X chromosome adopts a unique three-dimensional conformation that is dependent on Xist RNA.	Genome variation profiling by high throughput sequencing	Mus musculus	28	WIG SRA Run Selector	Erik Splinter	Jun 24, 2011
GSE157083	Memory-induced epigenome in Huntington's disease (HD) mice [ChIP-seq]	Genome variation profiling by high throughput sequencing	Mus musculus	28	WIG SRA Run Selector	Charles DECRAENE	Oct 06, 2022
GSE68644	Extrachromosomal DNA (microDNA) in Human, Mouse and Chicken	Genome variation profiling by high throughput sequencing	Gallus gallus Homo sapiens Mus musculus	24	TXT SRA Run Selector	Anindya Dutta	May 08, 2015
GSE73128	Mutations in histone and other genes in MLL2-impaired human and mouse cells	Genome variation profiling by high throughput sequencing	Homo sapiens Mus musculus	24	SRA Run Selector	Theo Kantidakis	Apr 13, 2016