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1562 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome variation profiling by SNP array
GSE17593	Melanoma short-term cultures and cell lines: expression profiling and CNV analyses	Expression profiling by array Genome variation profiling by SNP array Expression profiling by high throughput sequencing	Homo sapiens	41	BAM CEL	Michael Berger	Feb 01, 2010
GSE29876	Assessment of palindromes as platforms for DNA amplification in breast cancer	Genome variation profiling by genome tiling array Genome variation profiling by SNP array	Homo sapiens	31	BAR CEL CNCHP	Jamie Guenthoer	Jun 13, 2011
GSE23416	Reprogramming of Human Fibroblasts into Hematopoietic Progenitors by Fusion With Human Fetal Liver CD34+ Cells	Expression profiling by array Genome variation profiling by SNP array SNP genotyping by SNP array Expression profiling by high throughput sequencing	Homo sapiens	8	BED CEL CHP TXT	Vladislav M Sandler	Aug 04, 2011
GSE38548	Somatic cell fusions reveal extensive heterogeneity in basal-like breast cancer	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by array Genome variation profiling by SNP array Methylation profiling by genome tiling array	Homo sapiens	106	BED BW CEL FPKM_TRACKING PROBSCOREISLAND TXT	Kornelia Polyak	Jun 09, 2015
GSE39280	DNA copy number gain at 1q23.3 is associated with poor survival in metastatic bladder cancer [Affymetrix]	Genome variation profiling by SNP array	Homo sapiens	34	BED CEL PDF TXT	Markus Riester	Jul 07, 2013
GSE55160	Epigenome signatures during gastric carcinogenesis based on next generation sequencing	Genome variation profiling by SNP array SNP genotyping by SNP array Methylation profiling by high throughput sequencing	Homo sapiens	12	BED CEL CHP	Hee-jin Kim	Sep 01, 2015
GSE72533	Reconstructing gene regulatory networks of tumorigenesis	Expression profiling by array SNP genotyping by SNP array Genome variation profiling by SNP array Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	27	BED BW CEL WIG	Valeriya Malysheva	May 13, 2016
GSE76645	Small Traditional Human Communities Sustain Genomic Diversity Over Microgeographic Scales Despite Linguistic Isolation	Genome variation profiling by SNP array SNP genotyping by SNP array	Homo sapiens	240	BED BIM FAM IDAT	Tatiana M. Karafet	Jul 14, 2016
GSE80534	Population Prehistory in Island Southeast Asia	SNP genotyping by SNP array Genome variation profiling by SNP array	Homo sapiens	506	BED BIM CEL FAM TXT	Tatiana M. Karafet	Aug 02, 2017
GSE85466	Epigenomic Profiling of Primary Gastric Adenocarcinoma Reveals Super-enhancer Heterogeneity [SNP]	Genome variation profiling by SNP array	Homo sapiens	19	BED CEL TXT	Aditi Qamra	Sep 28, 2016
GSE85467	Epigenomic Profiling of Primary Gastric Adenocarcinoma Reveals Super-enhancer Heterogeneity	Methylation profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome variation profiling by SNP array	Homo sapiens	259	BED BEDGRAPH CEL IDAT TXT	Aditi Qamra	Sep 28, 2016
GSE93106	Genetic variation in four highland populations in the context of broader genetic diversity in Daghestan.	Genome variation profiling by SNP array SNP genotyping by SNP array	Homo sapiens	62	BED BIM FAM IDAT	Tatiana M. Karafet	Jan 04, 2020
GSE141752	Quantitative trait loci mapped for TCF21 binding, chromatin accessibility and chromosomal looping in coronary artery smooth muscle cells reveal molecular mechanisms of coronary disease loci	Genome binding/occupancy profiling by high throughput sequencing Other SNP genotyping by SNP array Genome variation profiling by SNP array	Homo sapiens	18	BED BEDPE HIC TXT	Thomas Quertermous	May 07, 2020
GSE219090	The dogs of Chernobyl: demographic insights into populations inhabiting the nuclear exclusion zone	Genome variation profiling by SNP array	Canis lupus familiaris	299	BED BIM FAM IDAT TXT	Alexander Christian Harris	Dec 14, 2022
GSE62907	The inactive X chromosome is epigenetically unstable and transcriptionally labile in breast cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Genome variation profiling by SNP array SNP genotyping by SNP array	Homo sapiens	39	BEDGRAPH CEL FPKM_TRACKING TXT	Ronan Chaligné	Jan 19, 2015
GSE79262	Mechanisms and disease associations of haplotype-dependent allele specific DNA methylation	Methylation profiling by genome tiling array Genome variation profiling by SNP array Methylation profiling by high throughput sequencing	Homo sapiens	326	BEDGRAPH IDAT VCF	Benjamin Tycko	Mar 21, 2016
GSE40698	Genotype (CNV and SNP) by Illumina 1MDuo and CBS from ENCODE/HudsonAlpha	Genome variation profiling by SNP array	Homo sapiens	64	BEDLOGR TXT	ENCODE DCC	Sep 07, 2012
GSE63058	7q11.23 dosage-dependent dysregulation in the human pluripotent state primes aberrant transcriptional programs in disease-relevant lineages	Expression profiling by array Expression profiling by high throughput sequencing Genome variation profiling by SNP array Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	139	BIGBED BIGWIG CEL CYCHP	Giuseppe Testa	Dec 15, 2014
GSE148396	Epstein-Barr virus nuclear antigen 2 (EBNA2) extensively rewires the human chromatin landscape at autoimmune risk loci	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Genome variation profiling by SNP array SNP genotyping by SNP array	Homo sapiens	29	BIM BW HIC IDAT NARROWPEAK TSV TXT	Matthew Weirauch	Sep 23, 2021
GSE178131	Epstein-Barr virus nuclear antigen 2 (EBNA2) extensively rewires the human chromatin landscape at autoimmune risk loci [Bead array]	Genome variation profiling by SNP array SNP genotyping by SNP array	Homo sapiens	4	BIM IDAT TXT	Matthew Weirauch	Sep 23, 2021