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202 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome variation profiling by SNP array			IDAT
GSE76645	Small Traditional Human Communities Sustain Genomic Diversity Over Microgeographic Scales Despite Linguistic Isolation	Genome variation profiling by SNP array SNP genotyping by SNP array	Homo sapiens	240	BED BIM FAM IDAT	Tatiana M. Karafet	Jul 14, 2016
GSE85467	Epigenomic Profiling of Primary Gastric Adenocarcinoma Reveals Super-enhancer Heterogeneity	Methylation profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome variation profiling by SNP array	Homo sapiens	259	BED BEDGRAPH CEL IDAT TXT	Aditi Qamra	Sep 28, 2016
GSE93106	Genetic variation in four highland populations in the context of broader genetic diversity in Daghestan.	Genome variation profiling by SNP array SNP genotyping by SNP array	Homo sapiens	62	BED BIM FAM IDAT	Tatiana M. Karafet	Jan 04, 2020
GSE219090	The dogs of Chernobyl: demographic insights into populations inhabiting the nuclear exclusion zone	Genome variation profiling by SNP array	Canis lupus familiaris	299	BED BIM FAM IDAT TXT	Alexander Christian Harris	Dec 14, 2022
GSE79262	Mechanisms and disease associations of haplotype-dependent allele specific DNA methylation	Methylation profiling by genome tiling array Genome variation profiling by SNP array Methylation profiling by high throughput sequencing	Homo sapiens	326	BEDGRAPH IDAT VCF	Benjamin Tycko	Mar 21, 2016
GSE148396	Epstein-Barr virus nuclear antigen 2 (EBNA2) extensively rewires the human chromatin landscape at autoimmune risk loci	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Genome variation profiling by SNP array SNP genotyping by SNP array	Homo sapiens	29	BIM BW HIC IDAT NARROWPEAK TSV TXT	Matthew Weirauch	Sep 23, 2021
GSE178131	Epstein-Barr virus nuclear antigen 2 (EBNA2) extensively rewires the human chromatin landscape at autoimmune risk loci [Bead array]	Genome variation profiling by SNP array SNP genotyping by SNP array	Homo sapiens	4	BIM IDAT TXT	Matthew Weirauch	Sep 23, 2021
GSE164942	Genetic effects on liver chromatin accessibility identify disease regulatory variants	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome variation profiling by SNP array	Homo sapiens	60	BW IDAT NARROWPEAK	Karen L Mohlke	May 01, 2021
GSE37657	AUTS2 project	Genome variation profiling by SNP array Genome variation profiling by genome tiling array	Homo sapiens	7	CEL IDAT TXT	Els Voorhoeve	Jul 12, 2012
GSE58781	Retinoblastoma SNP array data	Genome variation profiling by SNP array	Homo sapiens	94	CEL CSV IDAT RDATA	Elodie chapeaublanc	Jul 06, 2021
GSE58785	Pan-genomic study of primary human retinoblastoma samples	Expression profiling by array Genome variation profiling by SNP array Methylation profiling by genome tiling array Genome variation profiling by genome tiling array	Homo sapiens	312	CEL CSV IDAT XLS XLSX	Elodie chapeaublanc	Jul 06, 2021
GSE64573	The UBC-40 Urothelial Bladder Cancer Cell Line Index	Expression profiling by array Genome variation profiling by SNP array SNP genotyping by SNP array	Homo sapiens	70	CEL IDAT	Enrique Carrillo de Santa Pau	Jun 19, 2015
GSE66749	Cloning and Variation of Ground State Intestinal Stem Cells Super [expression & SNP studies]	Expression profiling by array Genome variation profiling by SNP array SNP genotyping by SNP array	Homo sapiens	66	CEL IDAT	Frank McKeon	May 29, 2015
GSE70770	Prostate cancer stratification using molecular profiles	Expression profiling by array Genome variation profiling by SNP array	Homo sapiens	808	CEL IDAT	Chandra Chilamakuri	Jul 30, 2015
GSE71525	A comprehensively characterized cell line panel highly representative of clinical ovarian high-grade serous carcinomas	Genome variation profiling by SNP array SNP genotyping by SNP array Methylation profiling by genome tiling array Expression profiling by array	Homo sapiens	93	CEL IDAT	Kelsie L Thu	Aug 11, 2016
GSE77276	The molecular landscape of hepatocellular carcinoma with portal vein tumor thrombosis	Non-coding RNA profiling by high throughput sequencing Methylation profiling by genome tiling array Genome variation profiling by high throughput sequencing Genome variation profiling by SNP array Expression profiling by high throughput sequencing	Homo sapiens	240	CEL CYCHP IDAT TXT	Jin Gu	Feb 17, 2017
GSE81025	Genomic analysis of human parthenogenetic haploid ESCs (hPGES), normal human ESCs(H9) and human forskin fibroblast	Expression profiling by high throughput sequencing Methylation profiling by genome tiling array Genome variation profiling by SNP array	Homo sapiens	14	CEL CYCHP IDAT	cuiqing zhong	Jul 13, 2016
GSE86260	Cancer Associated Fibroblasts are defined by a core set of epigenome changes that contribute to the tumor phenotype	Genome variation profiling by SNP array SNP genotyping by SNP array Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by array Methylation profiling by genome tiling array	Homo sapiens	52	CEL IDAT	Ruth Pidsley	Mar 26, 2018
GSE87915	Individuals with excess numbers of germline de novo CNVs	Genome variation profiling by array Genome variation profiling by genome tiling array Genome variation profiling by SNP array SNP genotyping by SNP array	Homo sapiens	52	CEL CYCHP GFF IDAT PAIR TXT	Pengfei Liu	Oct 14, 2016
GSE89401	Clonal variation in drug and radiation response among glioma-initiating cells is linked to proneural-mesenchymal transition	Expression profiling by array Genome variation profiling by SNP array SNP genotyping by SNP array Methylation profiling by array	Homo sapiens	199	CEL CYCHP IDAT	Bo Segerman	Dec 13, 2016