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30 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing				Shaun Mahony
GSE19409	Ligand-dependent dynamics of retinoic acid receptor binding during early neurogenesis	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	BAM TXT SRA Run Selector	Shaun Mahony	Dec 10, 2010
GSE19450	Rapid and synchronous clearance of PcG histone modifications from Hox genes anticipates motor neuron differentiation	Genome binding/occupancy profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array	Mus musculus	33	BAM TXT	Shaun Mahony	Dec 13, 2012
GSE21812	Hoxc9 ChIP-seq in differentiating motor neurons	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	BW TXT SRA Run Selector	Shaun Mahony	Sep 08, 2010
GSE30882	Embryonic stem cell based system for the discovery and mapping of developmental transcriptional programs	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	5	BAM BED TXT WIG SRA Run Selector	Shaun Mahony	Nov 12, 2011
GSE31456	Transcriptional mechanisms controlling direct motor neuron programming	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	26	BAM BED BW CEL TXT WIG SRA Run Selector	Shaun Mahony	Jul 04, 2013
GSE39433	Induced Cdx2 binding in progenitor motor neurons and its effect on H3K27me3 chromatin domains [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	BW TXT SRA Run Selector	Shaun Mahony	Jul 04, 2013
GSE39434	Chromatin landscape of progenitor motor neurons [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	5	BW TXT SRA Run Selector	Shaun Mahony	Jul 04, 2013
GSE39435	Induced Cdx2 binding in embryonic stem cells and endodermal cells	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	5	BAM BW WIG SRA Run Selector	Shaun Mahony	Mar 27, 2014
GSE39453	Induced Cdx2 binding in progenitor motor neurons and its effect on H3K27me3 chromatin domains	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	14	BW CEL	Shaun Mahony	Jul 04, 2013
GSE46707	Co-regulated gene expression downstream of a single transcription factor controls the acquisition of corticospinal motor neuron identity	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	BED BW TXT SRA Run Selector	Shaun Mahony	Jul 06, 2014
GSE48254	A Cdx4-Sall4 regulatory module controls the transition from mesoderm formation to embryonic hematopoiesis	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	7	BED BW SRA Run Selector	Shaun Mahony	Dec 02, 2013
GSE80321	A multi-step transcriptional and chromatin cascade underlies motor neuron programming (transcription factor ChIP-seq)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	58	BED BW TXT SRA Run Selector	Shaun Mahony	Dec 07, 2016
GSE80482	A multi-step transcriptional and chromatin cascade underlies motor neuron programming (Histone modification ChIP-seq)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	47	BW SRA Run Selector	Shaun Mahony	Dec 07, 2016
GSE80483	A multi-step transcriptional and chromatin cascade underlies motor neuron programming	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	887	BW TXT	Shaun Mahony	Dec 07, 2016
GSE110502	Characterizing protein-DNA binding event subtypes in ChIP-exo data	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Saccharomyces cerevisiae	9	BED SRA Run Selector	Shaun Mahony	Feb 13, 2018
GSE114171	Molecular basis of neuronal subtype bias introduced by proneural factors Ascl1 and Neurog2 (ATAC-seq)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	14	BED SRA Run Selector	Shaun Mahony	Feb 27, 2019
GSE114172	Molecular basis of neuronal subtype bias introduced by proneural factors Ascl1 and Neurog2 (ChIP-seq)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	31	BED TXT SRA Run Selector	Shaun Mahony	Feb 27, 2019
GSE114176	Molecular basis of neuronal subtype bias introduced by proneural factors Ascl1 and Neurog2	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	66	H5	Shaun Mahony	Feb 27, 2019
GSE140923	Alignment and quantification of ChIP-exo crosslinking patterns reveal the spatial organization of protein-DNA complexes	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	15	TAB SRA Run Selector	Shaun Mahony	Dec 08, 2019
GSE142375	Diversification of posterior Hox patterning by graded ability to engage inaccessible chromatin [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	BED SRA Run Selector	Shaun Mahony	Sep 06, 2020