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37 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing				Kornelia Polyak
GSE26141	Epigenetic regulation of cell type-specific expression patterns in the human mammary epithelium	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	41	TXT	Kornelia Polyak	Mar 01, 2011
GSE38548	Somatic cell fusions reveal extensive heterogeneity in basal-like breast cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Genome variation profiling by SNP array Methylation profiling by array Methylation profiling by genome tiling array	Homo sapiens	106	BED BW CEL FPKM_TRACKING PROBSCOREISLAND TXT	Kornelia Polyak	Jun 09, 2015
GSE46073	Gene expression and genome-wide location analysis of breast cancer cell-lines	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array	Homo sapiens	41	BED TXT	Kornelia Polyak	Jun 17, 2014
GSE63584	Response and resistance to BET bromodomain inhibitors in triple negative breast cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	65	WIG	Kornelia Polyak	Jan 07, 2016
GSE104988	KDM5B links cellular transcriptome heterogeneity to therapy resistance	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens	333	BED BROADPEAK BW NARROWPEAK TSV TXT	Kornelia Polyak	Oct 03, 2018
GSE113909	Myoepithelial cell perturbations in BRCA mutation carriers and in DCIS (ductal carcinoma in situ)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	54	BED NARROWPEAK TSV SRA Run Selector	Kornelia Polyak	Aug 20, 2019
GSE114597	TRPS1 is a lineage-specific transcriptional dependency in breast cancer [Seq]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	132	CSV GCT NARROWPEAK SRA Run Selector	Kornelia Polyak	Oct 03, 2018
GSE114600	TRPS1 is a lineage-specific transcriptional dependency in breast cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array	Homo sapiens	193	NARROWPEAK	Kornelia Polyak	Oct 03, 2018
GSE116831	Deletion of Cdkn1b in ACI rats perturbs mammary progenitor cell proliferation and differentiation through non-cell-autonomous mechanisms	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	52	NARROWPEAK TSV SRA Run Selector	Kornelia Polyak	Feb 11, 2019
GSE120957	The EN1 transcription factor drives neural features and brain metastases in triple negative breats cancer (TNBC)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	89	BED CSV SRA Run Selector	Kornelia Polyak	Aug 22, 2019
GSE131102	Synthetic lethal and resistance interactions with BET bromodomain inhibitors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	210	BED BW NARROWPEAK TXT	Kornelia Polyak	Mar 30, 2020
GSE163397	JAK-STAT signaling in inflammatory breast cancer enables chemotherapy-resistant cell states	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	131	BW	Kornelia Polyak	Nov 02, 2022
GSE202776	Epigenetic heterogeneity and transcriptional drivers of triple-negative breast cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by array	Homo sapiens	386	BW IDAT NARROWPEAK	Kornelia Polyak	Nov 09, 2023
GSE229428	Combination therapies to improve the efficacy of immunotherapy in triple-negative breast cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	34	BW	Kornelia Polyak	Aug 15, 2023
GSE237392	Loss of Kmt2c or Kmt2d drives brain metastasis via KDM6A-dependent upregulation of MMP3	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	81	BW	Kornelia Polyak	Apr 24, 2024
GSE249574	Cancer-stromal cell interactions in breast cancer brain metastases induce glycocalyx-mediated resistance to HER2-targeting therapies	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	64	BW	Kornelia Polyak	Apr 24, 2024
GSE251835	Midkine as a driver of age-related changes and increase in mammary tumorigenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	43	BED CSV MTX TSV	Kornelia Polyak	Aug 22, 2024
GSE259252	ZBTB7A is a modulator of KDM5-driven transcriptional networks in basal breast cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	103	BW H5 NARROWPEAK	Kornelia Polyak	Oct 14, 2024
GSE26137	Epigenetic regulation of cell type-specific expression patterns in the human mammary epithelium [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	14	TXT SRA Run Selector	Kornelia Polyak	Mar 01, 2011
GSE38788	Somatic cell fusions reveal extensive heterogeneity in basal-like breast cancer [ChIP-Seq 1]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	6	BED SRA Run Selector	Kornelia Polyak	Jun 10, 2015