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35 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing				Kornelia Polyak
GSE26137	Epigenetic regulation of cell type-specific expression patterns in the human mammary epithelium [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	14	TXT SRA Run Selector	Kornelia Polyak	Mar 01, 2011
GSE26141	Epigenetic regulation of cell type-specific expression patterns in the human mammary epithelium	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	41	TXT	Kornelia Polyak	Mar 01, 2011
GSE38548	Somatic cell fusions reveal extensive heterogeneity in basal-like breast cancer	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by array Genome variation profiling by SNP array Methylation profiling by genome tiling array	Homo sapiens	106	BED BW CEL FPKM_TRACKING PROBSCOREISLAND TXT	Kornelia Polyak	Jun 09, 2015
GSE38788	Somatic cell fusions reveal extensive heterogeneity in basal-like breast cancer [ChIP-Seq 1]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	6	BED SRA Run Selector	Kornelia Polyak	Jun 10, 2015
GSE38789	Somatic cell fusions reveal extensive heterogeneity in basal-like breast cancer [ChIP-Seq 2]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	9	BED PROBSCOREISLAND SRA Run Selector	Kornelia Polyak	Jun 10, 2015
GSE46055	Genome-wide location analysis in breast cancer cell-lines	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	24	BED SRA Run Selector	Kornelia Polyak	Jun 17, 2014
GSE46073	Gene expression and genome-wide location analysis of breast cancer cell-lines	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by genome tiling array	Homo sapiens	41	BED TXT	Kornelia Polyak	Jun 17, 2014
GSE63284	Response and resistance to BET bromodomain inhibitors in triple negative breast cancer [Chem-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	2	WIG SRA Run Selector	Kornelia Polyak	Jan 07, 2016
GSE63581	Response and resistance to BET bromodomain inhibitors in triple negative breast cancer [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	35	WIG SRA Run Selector	Kornelia Polyak	Jan 07, 2016
GSE63584	Response and resistance to BET bromodomain inhibitors in triple negative breast cancer	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	65	WIG	Kornelia Polyak	Jan 07, 2016
GSE69112	Somatic cell fusions reveal extensive heterogeneity in basal-like breast cancer [ChIP-Seq 3]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	23	BW SRA Run Selector	Kornelia Polyak	Jun 10, 2015
GSE104983	KDM5B links cellular transcriptome heterogeneity to therapy resistance (ChIP-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	171	BED BROADPEAK BW NARROWPEAK SRA Run Selector	Kornelia Polyak	Oct 03, 2018
GSE104988	KDM5B links cellular transcriptome heterogeneity to therapy resistance	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	333	BED BROADPEAK BW NARROWPEAK TSV TXT	Kornelia Polyak	Oct 03, 2018
GSE113909	Myoepithelial cell perturbations in BRCA mutation carriers and in DCIS (ductal carcinoma in situ)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	54	BED NARROWPEAK TSV SRA Run Selector	Kornelia Polyak	Aug 20, 2019
GSE114597	TRPS1 is a lineage-specific transcriptional dependency in breast cancer [Seq]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	132	CSV GCT NARROWPEAK SRA Run Selector	Kornelia Polyak	Oct 03, 2018
GSE114600	TRPS1 is a lineage-specific transcriptional dependency in breast cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array	Homo sapiens	193	NARROWPEAK	Kornelia Polyak	Oct 03, 2018
GSE116831	Deletion of Cdkn1b in ACI rats perturbs mammary progenitor cell proliferation and differentiation through non-cell-autonomous mechanisms	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	52	NARROWPEAK TSV SRA Run Selector	Kornelia Polyak	Feb 11, 2019
GSE120957	The EN1 transcription factor drives neural features and brain metastases in triple negative breats cancer (TNBC)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	89	BED CSV SRA Run Selector	Kornelia Polyak	Aug 22, 2019
GSE131026	Synthetic lethal and resistance interactions with BET bromodomain inhibitors [ATAC-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	16	BED BW SRA Run Selector	Kornelia Polyak	Mar 30, 2020
GSE131097	Synthetic lethal and resistance interactions with BET bromodomain inhibitors [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	61	BW NARROWPEAK SRA Run Selector	Kornelia Polyak	Mar 30, 2020