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15950 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			BED
GSE11431	Mapping of transcription factor binding sites in mouse embryonic stem cells	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	16	BED TXT SRA Run Selector	Chia-Lin Wei	Jun 12, 2008
GSE13008	Genome-wide mapping of RNA Polymerase II binding sites	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	4	BED TXT SRA Run Selector	Flora Vaccarino	Oct 02, 2008
GSE12889	CTCF demarcates chromatin domains	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	7	BED CEL TXT SRA Run Selector	Raja Jothi	Oct 20, 2008
GSE13518	Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	2	BED TXT SRA Run Selector	Leighton James Core	Dec 04, 2008
GSE13511	Genome-wide profiling of PPARγ:RXR and RNA polymerase II	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	18	BED WIG XLS SRA Run Selector	H.G. Stunnenberg	Dec 10, 2008
GSE12346	Priming for Th2 differentiation requires IL-2-mediated induction of IL-4 receptor alpha chain expression	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	9	BED	Dustin E Schones	Dec 11, 2008
GSE12646	Chromatin Signatures in Multipotent Human HSCs Indicate the Fate of Bivalent Genes during Differentiation	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Homo sapiens	24	BED CEL CHP TXT SRA Run Selector	Chongzhi Zang	Jan 09, 2009
GSE14344	esBAF is an essential component of the core pluripotency transcriptional network	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BED CEL TXT SRA Run Selector	Raja Jothi	Jan 20, 2009
GSE14254	Global Mapping of Histone H3 K4 and K27 Trimethylation: Lineage Fate Determination of Differentiating CD4+ T Cells	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	BED SRA Run Selector	Weiqun Peng	Jan 21, 2009
GSE14545	Identification of transcription factor Pha-4 binding regions	Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	4	BED TXT SRA Run Selector	Flora Vaccarino	Jan 24, 2009
GSE14664	ChIP-Seq of ERalpha and RNA polymerase II defines genes differentially responding to ligands	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	8	BED TXT SRA Run Selector	H.G. Stunnenberg	Mar 09, 2009
GSE15292	Drosophila at different time points of development: ChIP-chip, ChIP-seq, RNA-seq	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Drosophila melanogaster	936	BED BEDGRAPH TXT	Kevin P. White	Mar 20, 2009
GSE15501	Identification of transcription factor DPY-27 binding sites	Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	4	BED TXT SRA Run Selector	Flora Vaccarino	Apr 03, 2009
GSE15535	Genome-wide identification of the occupancy of RNA polymerase II (POL II) at L4/young adult stage in C. elegans	Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	6	BED TXT SRA Run Selector	Flora Vaccarino	Apr 11, 2009
GSE15567	Identification of transcription factor DAF-16 binding sites in C. elegans	Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	6	BED TXT SRA Run Selector	Flora Vaccarino	Apr 11, 2009
GSE15625	Identification of transcription factor MAB-5 binding sites	Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	4	BED TXT SRA Run Selector	Flora Vaccarino	Apr 11, 2009
GSE15628	RNA polymerase occupancy at embryonic stage and starved L1 stage in pha-4 transgenic worms	Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	6	BED TXT SRA Run Selector	Flora Vaccarino	Apr 11, 2009
GSE15286	Epigenetic modifications and their relationships to smRNA and mRNA transcriptomes in maize	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Zea mays	14	BED FA TXT SRA Run Selector	Xiangfeng Wang	Apr 28, 2009
GSE16013	Genome-wide maps of chromatin state in staged Drosophila embryos, ChIP-seq	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	114	BED BEDGRAPH SRA Run Selector	Kevin P. White	May 12, 2009
GSE15896	Genome wide uH2A localization analysis highlights Bmi1-dependent deposition of the mark at repressed genes.	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	BED TXT SRA Run Selector	Raja Jothi	May 20, 2009