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178 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			BEDPE
GSE146901	3D Genome Analysis Identifies Enhancer Hijacking Mechanism for High-Risk Factors in Human T-Lineage Acute Lymphoblastic Leukemial (T-ALL)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	52	BEDPE BW H5 HIC TXT XLS SRA Run Selector	Hong Wu	Mar 20, 2021
GSE163177	3D Genome of macaque fetal brain reveals evolutionary innovations during primate corticogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta	18	BED BEDPE BW HIC NARROWPEAK TXT SRA Run Selector	Yuting Liu	Dec 15, 2020
GSE214050	3D epigenome architecture orchestrates cis and trans regulation of flowering time in rice [ChIA-PET]	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa Indica Group Oryza sativa Japonica Group	12	BEDPE	yue li	Sep 28, 2022
GSE228247	3D genomic analysis reveals novel enhancer-hijacking caused by complex structural alterations that drive oncogene overexpression	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	34	BEDPE BW RESULTS	Xiaoyang Zhang	Apr 01, 2024
GSE228246	3D genomics analysis identifies enhancer hijacking caused by structural alterations and extrachromosomal circular DNA formation [HiChIP]	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	24	BEDPE	Xiaoyang Zhang	Apr 02, 2024
GSE183764	9sCa: MSL2 is an allelic dosage sensor in mammals	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Mus musculus	244	BED BEDPE BW RDATA RDS TSV TXT SRA Run Selector	Asifa Akhtar	Aug 10, 2023
GSE160768	A Quantitative Epistasis Framework For Interrogating the Network of Enhancers	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	58	BEDPE XLSX SRA Run Selector	xueqiu lin	Aug 12, 2022
GSE212234	A common cis-regulatory variant impacts normal-range and disease-associated human facial shape through regulation of PDKCC during chondrogenesis	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	35	BEDPE BROADPEAK BW TSV	Jaaved Mohammed	Jun 23, 2023
GSE212226	A common cis-regulatory variant impacts normal-range and disease-associated human facial shape through regulation of PDKCC during chondrogenesis [HiChIP]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	25	BEDPE TSV	Jaaved Mohammed	Jun 23, 2023
GSE244618	A comparative atlas of single-cell chromatin accessibility in the human brain	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	128	BEDPE SNAP	Yang Li	Oct 04, 2023
GSE193240	A primed immune transcriptional programme is activated in oligodendroglia in multiple sclerosis [ATAC-Seq and RNA-Seq II]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	4	BED BEDPE H5 RDS TBI TSV WIG	Eneritz Agirre	Jan 28, 2022
GSE193238	A primed immune transcriptional programme is activated in oligodendroglia in multiple sclerosis [ATAC-Seq and RNA-Seq]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BEDPE H5 RDS TBI TSV WIG	Eneritz Agirre	Jan 28, 2022
GSE133928	A topological atlas reveals layers of genome reorganization in colorectal cancer	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens	175	BED BEDPE BW CPG MATRIX TXT SRA Run Selector	Alejandro Reyes	Aug 24, 2020
GSE214796	ASCL1 a pioneer factor that induces subtype switching and characterizes adrenergic neuroblastoma	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens	44	BED BEDPE BW NARROWPEAK	Tze King Tan	Nov 21, 2023
GSE162609	ASPSCR1-TFE3 reprograms transcription by organizing enhancers around hexameric VCP	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	185	BEDPE BW WIG	Jinxiu Li	Jan 01, 2023
GSE230526	Aberrant non-canonical NF-κB signalling reprograms the epigenome landscape to drive oncogenic transcriptomes in multiple myeloma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	90	BEDPE BW COOL NARROWPEAK	Yinghui Li	Mar 01, 2024
GSE230292	Aberrant non-canonical NF-κB signalling reprograms the epigenome landscape to drive oncogenic transcriptomes in multiple myeloma [HICHIP]	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	2	BEDPE COOL	Yinghui Li	Mar 01, 2024
GSE214438	Age-associated chromatin re-organization in progenitor B cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Genome variation profiling by high throughput sequencing	Mus musculus	76	BED BEDPE TXT	Yaqiang Cao	Mar 01, 2024
GSE157339	Architectural role of cell-fate-instructive transcription factor MyoD in orchestrating 3D genome organization in muscle cells.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	122	BEDPE BW H5 HIC TXT XLS	Yong Zhang	May 01, 2021
GSE201911	Auxin-inducible degron 2 system deciphers functions of CTCF domains in transcriptional regulation [HiChIP]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	4	BEDPE	Beisi Xu	Dec 09, 2022