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62 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			COV
GSE85356	DNA methylation repels binding of hypoxia-inducible transcription factors to maintain tumour immunotolerance	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	285	BEDGRAPH COV TSV TXT	Jieyi Xiong	Jun 18, 2020
GSE104246	DNA methylation profiling of TF bound sites using ChIPBS (ChIP Bisulfite Sequencing)	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	14	BEDGRAPH COV SRA Run Selector	Eric M Mendenhall	Dec 30, 2021
GSE104248	Towards an integrative map of a single cell type's transcription factor landscape	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	16	BEDGRAPH COV	Eric M Mendenhall	Dec 30, 2021
GSE107580	Activation of neuronal genes via LINE-1 elements upon global DNA demethylation in human neural progenitors	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	28	BW COV TXT SRA Run Selector	Per Brattas	May 29, 2019
GSE108577	Rescue of Fragile X syndrome by DNA methylation editing of the FMR1	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	35	BW COV TXT WIG	Shawn Liu	Feb 16, 2018
GSE113881	DNMT3B maintains mCA landscape and regulates mCG status of bivalent promoters in human embryonic stem cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	30	BW COV TXT SRA Run Selector	Jia Li	Jun 02, 2019
GSE113946	Widespread transposable element-driven oncogene expression in cancers	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	6	BEDGRAPH BIGWIG COV SRA Run Selector	Daofeng Li	Feb 05, 2019
GSE120558	Gain of function DNMT3A mutations cause microcephalic dwarfism and hypermethylation of Polycomb-regulated regions	Methylation profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	66	BED BIGWIG COV IDAT TXT	Duncan Sproul	Nov 26, 2018
GSE126215	methyl-ATAC-seq measures DNA methylation at accessible chromatin	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	8	BEDGRAPH BW COV SRA Run Selector	Roman Spektor	Feb 08, 2019
GSE130140	Cancer-specific CTCF binding facilitates oncogenic transcriptional dysregulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Homo sapiens	92	BED BW COV MATRIX NARROWPEAK SF TAR TXT SRA Run Selector	Zhenjia Wang	Aug 19, 2020
GSE136849	Identification and Characterization of the Epigenome and Transcriptome in Human Neonates	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	492	BW COV SRA Run Selector	Yong Peng	Aug 09, 2020
GSE150592	DNA methylation analysis in dermal fibroblasts from African ancestry patients with systemic sclerosis	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	30	COV SRA Run Selector	Gary Hardiman	Jan 19, 2021
GSE152146	TNF induced inflammatory transcription dynamics and epigenetic changes	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	58	BIGWIG COV TXT SRA Run Selector	Zhuqiang Zhang	Nov 12, 2020
GSE156409	Age-associated cryptic transcription in mammalian stem cells is linked to permissive chromatin at cryptic promoters	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	52	BED BW COV TXT	Weiwei Dang	Jul 15, 2021
GSE156723	DNA methyation of intragenic CpG islands are required for differentiation from iPSC to NPC	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	13	COV NARROWPEAK TXT SRA Run Selector	Young-Joon Kim	Jan 06, 2021
GSE158406	De novo DNA methyltransferase activity in colorectal cancer is directed towards H3K36me3 marked CpG island	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	50	BIGWIG COV	Duncan Sproul	Nov 24, 2020
GSE159040	H3K27me3 shapes DNA methylome by inhibiting UHRF1-mediated H3 ubiquitination [Bisulfite-seq]	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	9	COV SRA Run Selector	Falong Lu	Jun 27, 2022
GSE159043	H3K27me3 shapes DNA methylome by inhibiting UHRF1-mediated H3 ubiquitination	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	23	BED BROADPEAK BW COV	Falong Lu	Jun 27, 2022
GSE167967	ATAC-seq of Multiple Myeloma	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	13	COV TXT SRA Run Selector	Benjamin G Barwick	Mar 03, 2021
GSE195556	An engineered Sox17 induces somatic to neural stem cell fate transition independently from pluripotency reprogramming	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	140	COV MTX TSV	Mingxi WENG	Jul 19, 2023