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118 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			FPKM_TRACKING
GSE38548	Somatic cell fusions reveal extensive heterogeneity in basal-like breast cancer	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by array Genome variation profiling by SNP array Methylation profiling by genome tiling array	Homo sapiens	106	BED BW CEL FPKM_TRACKING PROBSCOREISLAND TXT	Kornelia Polyak	Jun 09, 2015
GSE40594	Localization of the Rb tumor suppressor in MEFs during reprogramming to iPS and the consequence of Rb loss on the transcriptional profile and histone landscape in these cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	18	BED FPKM_TRACKING WIG SRA Run Selector	Julien Sage	Nov 13, 2014
GSE42350	Next Generation Sequencing Analysis of Wild Type and 53BP1-/- Transcriptomes in B lymphocytes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	FPKM_TRACKING WIG SRA Run Selector	Thiago Y Oliveira	Feb 12, 2013
GSE48085	Genome-scale analysis in blood progenitor and mast cells reveals how lineage-affiliated transcription factors control distinct regulatory programs [ChIP-Seq/RNA-Seq Experiments]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	20	BED BEDGRAPH FPKM_TRACKING SRA Run Selector	Felicia Ng	Apr 24, 2014
GSE48086	Genome-scale analysis in blood progenitor and mast cells reveals how lineage-affiliated transcription factors control distinct regulatory programs	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Mus musculus	29	BED BEDGRAPH FPKM_TRACKING	Felicia Ng	Apr 24, 2014
GSE52339	A high-resolution view of transcription and chromatin states across distinct metabolic states in budding yeast	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	202	FPKM_TRACKING TXT SRA Run Selector	Zheng Kuang	Aug 31, 2014
GSE53837	Allelic expression mapping across cell lineages reveal repressor disruption among disease SNPs	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	41	BED FPKM_TRACKING SRA Run Selector	Tony Kwan	Nov 03, 2014
GSE57227	Genome wide binding and transcriptome analysis of human FXR in primary human hepatocytes [HTS]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	6	BEDGRAPH DIFF FPKM_TRACKING SRA Run Selector	Le Zhan	Jul 24, 2014
GSE57577	Engineering of a histone-recognition domain in Dnmt3a alters the epigenetic landscape of ESCs revealing changes in lineage specification and chromosomal stability	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	27	FPKM_TRACKING	Hyunjae R Kim	Jun 22, 2015
GSE58531	Epigenetic regulation by chromatin activation mark H3K4me3 in primate progenitor cells within adult neurogenic niche	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Papio anubis	3	BED FPKM_TRACKING	Chin-Hsing Annie Lin	Jul 16, 2014
GSE59119	The contribution of cohesin-SA1 to chromatin architecture and gene expression in two murine tissues	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	51	FPKM_TRACKING TXT ZIP SRA Run Selector	Ana Losada	Apr 07, 2015
GSE59773	Insights into the epigenomic landscape of the human malaria vector Anopheles gambiae	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Anopheles gambiae	5	BED FPKM_TRACKING GTF WIG SRA Run Selector	Elena Gómez-Díaz	Sep 04, 2014
GSE61523	Epigenetic targeting of activation-induced cytidine deaminase	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	FPKM_TRACKING WIG SRA Run Selector	Thiago Y Oliveira	Jan 30, 2015
GSE62193	Dissecting neural differentiation regulatory networks through epigenetic footprinting	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens	99	FPKM_TRACKING TXT SRA Run Selector	Michael Johannes Ziller	Nov 02, 2014
GSE62907	The inactive X chromosome is epigenetically unstable and transcriptionally labile in breast cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Genome variation profiling by SNP array SNP genotyping by SNP array	Homo sapiens	39	BEDGRAPH CEL FPKM_TRACKING TXT	Ronan Chaligné	Jan 19, 2015
GSE62909	SOX15 governs a transcriptional program in human esophageal stratified epithelium and in a subset of esophageal adenocarcinomas	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	6	BED DIFF FPKM_TRACKING WIG SRA Run Selector	Ramesh Shivdasani	Nov 09, 2015
GSE62966	Analysis of allele specific expression and its chromatin state to identify genes that are escaping X chromosome inactivation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	29	BEDGRAPH FPKM_TRACKING TXT XLS SRA Run Selector	Ronan Chaligné	Jan 22, 2015
GSE66216	Nucleosome dynamics in human colorectal cancer specimens reveal activation of a CNOT3-regulated pathway of embryonic stem cell self-renewal	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	45	BED FPKM_TRACKING TXT WIG SRA Run Selector	Paloma Cejas	Dec 20, 2016
GSE68299	Regulation of histone methylation and gene expression reprogramming in rice inflorescence meristem	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa Japonica Group	14	FPKM_TRACKING WIG XLS SRA Run Selector	shaoli zhou	May 14, 2015
GSE69878	MCPyV ST activates Max target genes by recruiting TRRAP/EP400 complex	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	31	BED FPKM_TRACKING TXT WIG	Jingwei Cheng	Sep 28, 2017