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118 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			FPKM_TRACKING
GSE72087	Characterization of chromatin and gene expression changes during fasting in mouse liver	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	50	BEDGRAPH CSV FPKM_TRACKING	Songjoon Baek	Dec 20, 2016
GSE93602	Genome-wide analysis reveals dual roles for Ikaros in regulation of macrophage chromatin state and inflammatory gene expression	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	43	BEDGRAPH CSV FPKM_TRACKING	Songjoon Baek	Jun 26, 2018
GSE93739	Anti-inflammatory Chromatinscape Associated with Clinically Relevant Timing of Glucocorticoid Treatment	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	30	BEDGRAPH CSV FPKM_TRACKING	Songjoon Baek	Aug 08, 2017
GSE96770	Pro-inflammatory cytokine treatments in primary mouse hepatocytes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	52	BEDGRAPH FPKM_TRACKING	Songjoon Baek	Oct 10, 2017
GSE73696	Effects of NSD2 depletion on gene expression and H3K36me2 in a lung cancer cell line	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	30	FPKM_TRACKING TXT SRA Run Selector	Maria Barrero	Feb 14, 2017
GSE99167	CD4+ T cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	38	BED FPKM_TRACKING	Romain Boidot	Oct 02, 2017
GSE92468	Nucleosomes inhibit intragenic binding of Rap1p and subsequent cryptic transcription	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	30	FPKM_TRACKING	Michael Buck	Nov 01, 2021
GSE66216	Nucleosome dynamics in human colorectal cancer specimens reveal activation of a CNOT3-regulated pathway of embryonic stem cell self-renewal	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	45	BED FPKM_TRACKING TXT WIG SRA Run Selector	Paloma Cejas	Dec 20, 2016
GSE62907	The inactive X chromosome is epigenetically unstable and transcriptionally labile in breast cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Genome variation profiling by SNP array SNP genotyping by SNP array	Homo sapiens	39	BEDGRAPH CEL FPKM_TRACKING TXT	Ronan Chaligné	Jan 19, 2015
GSE62966	Analysis of allele specific expression and its chromatin state to identify genes that are escaping X chromosome inactivation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	29	BEDGRAPH FPKM_TRACKING TXT XLS SRA Run Selector	Ronan Chaligné	Jan 22, 2015
GSE157268	Nuclear m6A reader Ythdc1 regulates the scaffold function of LINE1 RNA in mouse ESCs and early embryos.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	54	BW FPKM_TRACKING	Chuan Chen	Apr 08, 2021
GSE83976	Genome-wide Identification of Neuronal Activity-regulated Genes in Drosophila	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	89	BW FPKM_TRACKING	Xiao Chen	Dec 12, 2016
GSE111687	DNA methylation dynamics of oocyte in follicular maturation	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	82	BED BW FPKM_TRACKING	Xiaolong Chen	Dec 25, 2020
GSE69878	MCPyV ST activates Max target genes by recruiting TRRAP/EP400 complex	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	31	BED FPKM_TRACKING TXT WIG	Jingwei Cheng	Sep 28, 2017
GSE164036	Genomic and epigenomic adaptation in SP-R210 (Myo18A) isoform-deficient macrophages	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	41	BED FPKM_TRACKING NARROWPEAK	Zissis Chroneos	Dec 31, 2020
GSE116798	Transcriptomic and epigenetic profiling of genome control in the germline stem cell cycle in mice	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	23	BEDGRAPH FPKM_TRACKING	Shinichiro Chuma	Feb 06, 2020
GSE85135	Recurrent somatic mutations in POLR2A define a distinct subset of meningiomas	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	184	BED FPKM_TRACKING	Victoria Elizabeth Clark	Aug 21, 2016
GSE81671	Genome models integrating chromatin contacts and nuclear lamin-genome interactions reveal implications of laminopathy-causing lamin mutations on genome architecture	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	25	BED FPKM_TRACKING SRA Run Selector	Philippe Collas	Dec 22, 2016
GSE109924	TAD cliques shape the 4-dimensional genome during dual lineage terminal differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	34	BED BW FPKM_TRACKING HIC SRA Run Selector	Philippe Collas	Feb 23, 2019
GSE119631	Characterization of the dynamics of lamin A and lamin B LADs in HepG2 cells: impact of cyclosporin A	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	8	BED BEDGRAPH FPKM_TRACKING SRA Run Selector	Philippe Collas	Feb 19, 2019