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118 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			FPKM_TRACKING
GSE199499	Single-cell chromatin accessibility profiling reveals a self-renewing muscle satellite cell state	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	28	ARROW FPKM_TRACKING RDS	Yarui Diao	Jun 18, 2023
GSE38548	Somatic cell fusions reveal extensive heterogeneity in basal-like breast cancer	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by array Genome variation profiling by SNP array Methylation profiling by genome tiling array	Homo sapiens	106	BED BW CEL FPKM_TRACKING PROBSCOREISLAND TXT	Kornelia Polyak	Jun 09, 2015
GSE40594	Localization of the Rb tumor suppressor in MEFs during reprogramming to iPS and the consequence of Rb loss on the transcriptional profile and histone landscape in these cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	18	BED FPKM_TRACKING WIG SRA Run Selector	Julien Sage	Nov 13, 2014
GSE48085	Genome-scale analysis in blood progenitor and mast cells reveals how lineage-affiliated transcription factors control distinct regulatory programs [ChIP-Seq/RNA-Seq Experiments]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	20	BED BEDGRAPH FPKM_TRACKING SRA Run Selector	Felicia Ng	Apr 24, 2014
GSE48086	Genome-scale analysis in blood progenitor and mast cells reveals how lineage-affiliated transcription factors control distinct regulatory programs	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Mus musculus	29	BED BEDGRAPH FPKM_TRACKING	Felicia Ng	Apr 24, 2014
GSE53837	Allelic expression mapping across cell lineages reveal repressor disruption among disease SNPs	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	41	BED FPKM_TRACKING SRA Run Selector	Tony Kwan	Nov 03, 2014
GSE58531	Epigenetic regulation by chromatin activation mark H3K4me3 in primate progenitor cells within adult neurogenic niche	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Papio anubis	3	BED FPKM_TRACKING	Chin-Hsing Annie Lin	Jul 16, 2014
GSE59773	Insights into the epigenomic landscape of the human malaria vector Anopheles gambiae	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Anopheles gambiae	5	BED FPKM_TRACKING GTF WIG SRA Run Selector	Elena Gómez-Díaz	Sep 04, 2014
GSE62909	SOX15 governs a transcriptional program in human esophageal stratified epithelium and in a subset of esophageal adenocarcinomas	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	6	BED DIFF FPKM_TRACKING WIG SRA Run Selector	Ramesh Shivdasani	Nov 09, 2015
GSE66216	Nucleosome dynamics in human colorectal cancer specimens reveal activation of a CNOT3-regulated pathway of embryonic stem cell self-renewal	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	45	BED FPKM_TRACKING TXT WIG SRA Run Selector	Paloma Cejas	Dec 20, 2016
GSE69878	MCPyV ST activates Max target genes by recruiting TRRAP/EP400 complex	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	31	BED FPKM_TRACKING TXT WIG	Jingwei Cheng	Sep 28, 2017
GSE74055	Histone H3 lysine 4 monomethylation modulates longrange chromatin interactions at enhancers	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	153	BED BW FPKM_TRACKING TXT SRA Run Selector	Jian Yan	Jan 09, 2018
GSE74850	Effects of dynamic cytosine methylation on alternative pre-mRNA splicing in T lymphocytes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	14	BED BW FPKM_TRACKING SRA Run Selector	David Sturgill	Jan 04, 2016
GSE80089	Gene expression profiling and genome-wide maps in PDGFB-induced glioma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	30	BED FPKM_TRACKING TXT	Richard Lu	May 17, 2016
GSE81671	Genome models integrating chromatin contacts and nuclear lamin-genome interactions reveal implications of laminopathy-causing lamin mutations on genome architecture	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	25	BED FPKM_TRACKING SRA Run Selector	Philippe Collas	Dec 22, 2016
GSE82211	The lncRNA genomic landscape of oligodendrocytes reveals myelination control by a lncOL1/Suz12 complex in the CNS	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus Rattus norvegicus	11	BED FPKM_TRACKING TXT	Richard Lu	Dec 28, 2016
GSE83728	Epigenetic Lanscape and BRD4 Transcriptional Dependency of PAX3-FOXO1 Driven Rhabdomyosarcoma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	80	BED BEDGRAPH FPKM_TRACKING	Xinyu Wen	Apr 27, 2017
GSE84630	Fusion Negative Rhabdomyosarcoma Cell Lines	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	7	BED FPKM_TRACKING	Xinyu Wen	Dec 20, 2016
GSE85135	Recurrent somatic mutations in POLR2A define a distinct subset of meningiomas	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	184	BED FPKM_TRACKING	Victoria Elizabeth Clark	Aug 21, 2016
GSE85171	Epigenetic Reprogramming of mutant RAS-driven Rhabdomyosarcoma via MEK Inhibition	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	60	BED CEL FPKM_TRACKING	Xinyu Wen	Apr 01, 2018