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118 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			FPKM_TRACKING
GSE221291	Thioredoxin-interacting protein is essential for memory T cell formation via the regulation of the redox metabolism	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	29	BIGWIG FPKM_TRACKING MTX TSV	Masahiro Kiuchi	Dec 23, 2022
GSE215673	Cholinergic control of Th17 cell pathogenicity in experimental autoimmune encephalomyelitis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	18	FPKM_TRACKING NARROWPEAK	Tak Mak	Nov 13, 2022
GSE210817	Outward-oriented sites within clustered CTCF boundaries are key for intraTAD chromatin interactions and gene regulation	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	571	BEDGRAPH FPKM_TRACKING WIG	Xiao Ge	Oct 31, 2023
GSE199499	Single-cell chromatin accessibility profiling reveals a self-renewing muscle satellite cell state	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	28	ARROW FPKM_TRACKING RDS	Yarui Diao	Jun 18, 2023
GSE196895	IL-33 priming and antigenic stimulation synergistically promote the transcription of proinflammatory cytokine and chemokine genes in human skin mast cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	30	BEDGRAPH FPKM_TRACKING TDF	HUA HUANG	Oct 06, 2023
GSE189825	Partial resistance to HDAC inhibitors in FAPs of dystrophic muscles at late stages of disease is associated to epigenetic and transcriptional features of cellular senescence	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	36	FPKM_TRACKING	Pier Lorenzo Puri	Feb 01, 2022
GSE184391	BACH1 Deficiency Prevents Neointima Formation and Maintains the Differentiated Phenotype of Vascular Smooth Muscle Cell by Regulating Chromatin Accessibility	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	20	BW FPKM_TRACKING SRA Run Selector	Jieyu Guo	May 31, 2023
GSE182816	Discrete regulatory modules instruct hematopoietic lineage commitment and differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	116	BW FPKM_TRACKING MTX STARCH TSV	Grigorios Georgolopoulos	Sep 30, 2021
GSE174528	SuperSeries Acute depletion of CTCF directly affects MYC regulation through loss of enhancer–promoter looping	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	35	BED BW FPKM_TRACKING	Chunliang Li	May 17, 2021
GSE172250	A mouse model for assessing mTOR kinase-independent role and off-target effect of mTOR kinase inhibitors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	41	BED FPKM_TRACKING TSV	Yi Zheng	Aug 29, 2023
GSE172247	A mouse model for assessing mTOR kinase-independent role and off-target effect of mTOR kinase inhibitors [I]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	15	BED FPKM_TRACKING SRA Run Selector	Yi Zheng	Aug 30, 2023
GSE167478	MYCN directly regulates TET1 expression to control 5-hmC distribution and enhance neuroblastoma cell migration in hypoxia	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	22	FPKM_TRACKING NARROWPEAK	Anastasia Hains	Aug 10, 2022
GSE166897	The role of ATXR6 expression in modulating genome stability and transposable element repression in Arabidopsis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Arabidopsis thaliana blank sample	241	BW FPKM_TRACKING TXT WIG	magdalena ewelina potok	Nov 23, 2021
GSE164373	Ewing sarcoma cell lines	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	27	BROADPEAK FPKM_TRACKING NARROWPEAK	Olivier Delattre	May 09, 2022
GSE164225	MKN7_EB by EHF knockdown	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	10	BEDGRAPH BIGWIG FPKM_TRACKING	Masaki Fukuyo	Aug 24, 2021
GSE164036	Genomic and epigenomic adaptation in SP-R210 (Myo18A) isoform-deficient macrophages	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	41	BED FPKM_TRACKING NARROWPEAK	Zissis Chroneos	Dec 31, 2020
GSE162678	maize DDM1 targets RNA-directed DNA methylation on active chromatin	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Zea mays	28	BEDGRAPH FPKM_TRACKING TXT SRA Run Selector	Jincheng Long	Dec 05, 2020
GSE162441	MLL-fusion-mediated activation of FLT3-ITD lesions promotes leukemogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	22	BED BEDGRAPH BIGWIG BW FPKM_TRACKING SRA Run Selector	Rohan Nishant Shah	Jul 15, 2021
GSE162294	Transcriptional Inactivation of TP53 and BMP Pathway Components Mediates Therapy-induced Dedifferentiation and Metastasis in Prostate Cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	87	BEDGRAPH FPKM_TRACKING TXT	Filippo Giancotti	Jan 20, 2022
GSE157268	Nuclear m6A reader Ythdc1 regulates the scaffold function of LINE1 RNA in mouse ESCs and early embryos.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	54	BW FPKM_TRACKING	Chuan Chen	Apr 08, 2021