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191 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			GFF
GSE31602	Tissue-specific nuclei purification from animal models for genome-wide expression and chromatin profiling.	Expression profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	18	BAM BEDGRAPH GFF PAIR PDF TXT WIG SRA Run Selector	Jorja Henikoff	Dec 05, 2011
GSE81436	The ortholog of DDM1 is mainly required for CHG and CG methylation of heterochromatin and is involved in DRM2-mediated CHH methylation that targets mostly genic regions of the rice genome	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Oryza sativa Japonica Group	17	BAM BW CSV GFF WIG XLS SRA Run Selector	chao zhou	Jun 13, 2016
GSE23537	modENCODE_White Lab: genome-wide ChIP-chip and ChIP-Seq data	Genome binding/occupancy profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array	Drosophila melanogaster Drosophila pseudoobscura Drosophila simulans Drosophila yakuba	247	BAR BED BEDGRAPH CEL GFF WIG SRA Run Selector	Kevin P. White	Aug 11, 2010
GSE15884	High resolution analysis of epigenetic changes associated with X inactivation	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by genome tiling array Genome binding/occupancy profiling by genome tiling array	Mus musculus	58	BED GFF TXT WIG	H.G. Stunnenberg	Jun 06, 2009
GSE19461	Activin/Nodal signalling controls divergent transcriptional networks in pluripotent and endoderm progenitors.	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	5	BED GFF TXT SRA Run Selector	Matthew Trotter	Nov 11, 2011
GSE21301	Orchestration of development by the bifunctional transcription factor, APETALA2	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	4	BED GFF SRA Run Selector	Felix Ott	Apr 13, 2010
GSE23787	H2A.Z Demarcates Intergenic Regions of the Plasmodium falciparum Epigenome That Are Dynamically Marked by H3K9ac and H3K4me3	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Plasmodium falciparum 3D7	29	BED GFF TXT	H.G. Stunnenberg	Oct 28, 2010
GSE23867	Epigenetic profile of the Plasmodium falciparum intraerythrocytic cycle	Genome binding/occupancy profiling by high throughput sequencing	Plasmodium falciparum 3D7	17	BED GFF SRA Run Selector	H.G. Stunnenberg	Oct 28, 2010
GSE24398	Diverse roles and interactions of the SWI/SNF chromatin-remodeling complex revealed using global approaches	Genome binding/occupancy profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array	Homo sapiens	10	BED GFF	Ghia Euskirchen	Jan 10, 2011
GSE25933	Caenorhabditis elegans chromosome arms are anchored to the nuclear membrane via discontinuous association with LEM-2	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by genome tiling array	Caenorhabditis elegans	31	BED GFF GFF3 PAIR SAM TXT WIG	DCC modENCODE	Dec 22, 2010
GSE26097	Pluripotency Factors Regulate Definitive Endoderm Specification through Eomesodermin	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	2	BED GFF TXT SRA Run Selector	Matthew Trotter	Jan 25, 2011
GSE28115	CBX3 Regulates Efficient RNA Processing Genome Wide	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	39	BED BEDGRAPH GFF GPR PAIR SRA Run Selector	Bing Ren	May 24, 2012
GSE32627	Genome-wide mapping of Sox6 binding sites in mouse fetal myotubes	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	BED GFF SRA Run Selector	Chung-Il An	Oct 06, 2011
GSE34546	Endogenous mammalian histone H3.3 exhibits chromatin-related functions during development	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BED GFF SRA Run Selector	Henriette O'Geen	Apr 24, 2013
GSE41354	Distribution of insulator proteins CP190, dCTCF, Su(Hw) and Mod(mdg4)2.2 in Drosophila S2 cells in the presence or absence of dPARP inhibitor 3AB	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	10	BED GFF SRA Run Selector	Chin-Tong Ong	Sep 15, 2013
GSE50769	Mapping the inter- and intra-chromosomal interactions of specific insulator binding sites with circular chromosome conformation capture (4C) assay (Gondor et al., 2008 Nature Protocol)	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	13	BED GFF PAIR TXT	Chin-Tong Ong	Sep 15, 2013
GSE52349	The nucleosomal barrier to promoter escape by RNA Polymerase II is overcome by the chromatin remodeler Chd1	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	14	BED BEDGRAPH GFF PAIR WIG	Jorja Henikoff	Apr 15, 2014
GSE59779	Studies of regulation of mouse X inactivation and genes escaping XCI	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus Mus musculus x Mus spretus	70	BED BIGWIG GFF PAIR TXT XLS	Xinxian Deng	Feb 20, 2015
GSE59980	Analysis of an artificial zinc finger epigenetic modulator: widespread binding but limited regulation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	25	BED GFF TXT SRA Run Selector	Matt Grimmer	Aug 01, 2014
GSE60106	Global loss of DNA methylation uncovers intronic enhancers in genes	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	11	BED BW GFF SRA Run Selector	Peggy J Farnham	Sep 10, 2014