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387 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			HIC
GSE215325	Doxorubicin Changes the Spatial Organization of the Genome around Active Promoters	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens	30	BW HIC	Maria Valieva	Mar 31, 2023
GSE126112	3D ATAC-PALM: Super-resolution Imaging of the Accessible Genome	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	14	BW HIC MCOOL TXT SRA Run Selector	Robert Tjian	Jan 29, 2020
GSE146901	3D Genome Analysis Identifies Enhancer Hijacking Mechanism for High-Risk Factors in Human T-Lineage Acute Lymphoblastic Leukemial (T-ALL)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	52	BEDPE BW H5 HIC TXT XLS SRA Run Selector	Hong Wu	Mar 20, 2021
GSE163177	3D Genome of macaque fetal brain reveals evolutionary innovations during primate corticogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta	18	BED BEDPE BW HIC NARROWPEAK TXT SRA Run Selector	Yuting Liu	Dec 15, 2020
GSE236253	3D gene regulation network in glioma ferroptosis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	18	BW HIC TXT	Niannian Li	Oct 23, 2023
GSE220303	3D genome remodeling and homologous pairing during meiotic prophase of mouse oogenesis and spermatogenesis	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	44	BW HIC PAIRS TXT	Jing He	Sep 23, 2023
GSE163625	3D genomics across the tree of life reveals condensin II as a determinant of architecture type [Hi-C]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	2	HIC TXT SRA Run Selector	Angela Sedeno Cacciatore	Apr 26, 2021
GSE128952	A DNA tumor virus globally reprograms host 3D genome architecture to achieve immortal growth	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	32	BED BEDGRAPH HIC NARROWPEAK TXT SRA Run Selector	Sizun Jiang	Dec 22, 2022
GSE241283	A MYOD-SKP2 axis boosts tumorigenesis in fusion negative rhabdomyosarcoma by preventing differentiation through p57Kip2 targeting	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	10	BED HIC TXT	Matteo Cassandri	Aug 30, 2023
GSE245495	A MYOD-SKP2 axis boosts tumorigenesis in fusion negative rhabdomyosarcoma by preventing differentiation through p57Kip2 targeting [Hi-ChIP]	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	2	HIC	Matteo Cassandri	Oct 16, 2023
GSE162148	A Pig BodyMap Transcriptome Reveals Diverse Tissue Physiologies and Evolutionary Dynamics of Transcription	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Canis lupus familiaris Cavia porcellus Felis catus Gallus gallus Homo sapiens Macaca mulatta Mus musculus Oryctolagus cuniculus Ovis aries Rattus norvegicus Sus scrofa	553	HIC TXT	jin long	Apr 20, 2021
GSE162139	A Pig BodyMap Transcriptome Reveals Diverse Tissue Physiologies and Evolutionary Dynamics of Transcription [human Hi-C]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	3	HIC TXT SRA Run Selector	jin long	Apr 20, 2021
GSE162140	A Pig BodyMap Transcriptome Reveals Diverse Tissue Physiologies and Evolutionary Dynamics of Transcription [non-human Hi-C]	Genome binding/occupancy profiling by high throughput sequencing	Canis lupus familiaris Felis catus Oryctolagus cuniculus Ovis aries Rattus norvegicus Sus scrofa	16	HIC TXT SRA Run Selector	jin long	Apr 20, 2021
GSE235704	A SWI/SNF-dependent transcriptional regulation mediated by POU2AF2/C11orf53 at enhancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	50	BW HIC	Lu Wang	Jan 19, 2024
GSE155839	A Transcriptional State Driven by Yin Yang 1 Confers a Therapeutic Vulnerability in Glioblastoma Stem Cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	21	BW HIC	Zhixin Qiu	Jun 01, 2022
GSE125972	A distal super enhancer mediates estrogen-dependent mouse uterine–specific gene transcription of Insulin-like growth factor 1 (Igf1)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	38	BIGWIG HIC TXT SRA Run Selector	Sylvia C Hewitt	May 08, 2019
GSE232887	A gene desert required for regulatory control of pleiotropic Shox2 expression and embryonic survival	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	17	BED BW COOL HIC NARROWPEAK	Marco Osterwalder	Jun 01, 2024
GSE134055	A map of cis-regulatory elements and 3D genome structures in zebrafish	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Danio rerio	204	BED BW HIC NARROWPEAK TXT SRA Run Selector	Yu Luan	Sep 04, 2020
GSE211904	A multiple super-enhancer region establishes inter-TAD interactions and controls Hoxa function in cranial neural crest	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	67	BW HIC TXT	Filippo M. RIJLI	Apr 27, 2023
GSE232490	A multiscale 3D chromatin architecture that controls development of the humoral immune system is assembled by IKAROS	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	120	BEDGRAPH BW HIC TBI	Katia Georgopoulos	Nov 20, 2023